Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h23
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0821 - 27960414-27961253                                         29   2.7  
01_05_0135 + 18460416-18460482,18460614-18460942                       28   4.8  
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366...    28   6.3  
01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48...    28   6.3  

>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 128 FLLHLRIQPDVRNHPRATRACHTAHN 205
           FLLH R+ P    HPRA RA    H+
Sbjct: 50  FLLHRRVVPLPSPHPRALRAVSALHS 75


>01_05_0135 + 18460416-18460482,18460614-18460942
          Length = 131

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 86  IAILKTAVRSL*PRFLLHLRIQPDVRNHPRATRAC 190
           I+  KT      PR LLHL + P  RN    TR C
Sbjct: 63  ISAAKTGRTPTAPRTLLHLPLPPSHRNRCAITRIC 97


>02_01_0502 -
           3659564-3659660,3659923-3660061,3660161-3660238,
           3660486-3660654,3660757-3660873,3660956-3661102,
           3661203-3661388,3661472-3661720,3662196-3662432,
           3662511-3662673,3662748-3662866,3662976-3663068,
           3663595-3663735,3663813-3663896,3663974-3664084,
           3664162-3664260,3664501-3664623,3664908-3664958,
           3665152-3665275,3665357-3665514,3665595-3665709,
           3665931-3666060,3666163-3666328,3667047-3667136,
           3667650-3667857,3668270-3668439,3668542-3668577
          Length = 1199

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 487 TAFKRNGMQDQEHSKLLGATNFLVRCPRDVSIEC 588
           T+   N  + +E+S L    +F++RCPRD+S  C
Sbjct: 290 TSASENDEELREYS-LQALESFMLRCPRDISPYC 322


>01_01_0061 +
           483116-483757,483891-484046,484171-484262,484410-485076
          Length = 518

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 411 PTSQDKICHTVLSIRRRPYCAKVSSNSVQAERNARSRAFEAV 536
           P+S D++C +  S ++RP  +     +++    A+  A EA+
Sbjct: 242 PSSDDELCSSATSSKKRPSTSTRVPEAMEQREQAQKAALEAL 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,896,386
Number of Sequences: 37544
Number of extensions: 244952
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)