Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h22
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.9  
SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   3.4  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   3.4  
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   4.5  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +3

Query: 372 PEVTLTAYIADDAKKPDEKKYEIAVLDSNQNDSAVNENNRSLGSKICHVCPHPCEFAKH 548
           P+V +    ADD K PD+ + E+A L  +   SA  E +  + S+I  V   P  + KH
Sbjct: 607 PDVIVCYIGADDGKSPDQIQKELADLAESVKSSA--EASAKIVSEIIQV---PSVYHKH 660


>SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 375 EVTLTAYIADDAKKPDE--KKYEIAVLDSNQNDSAVN 479
           +VT    +A+D  K  E  KKY + VLD   ND+  N
Sbjct: 187 DVTAFDRVAEDKSKLMEALKKYNLEVLDDMLNDAGAN 223


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -3

Query: 275 IIPTQSNVSFVYTTQSINITDKIQNNANYYVFCLLQHLIHQLS*VSKLTIIVNRLSLFLV 96
           ++P Q++    Y   S N  D IQN A +       HL   L       +++N  S  L 
Sbjct: 286 MLPLQTDFREAYEESSTNEQDFIQNLALFLCAFFSSHL-RPLENPENQEVLLNAHSYLLN 344

Query: 95  LFRINTKPL 69
           + RIN + +
Sbjct: 345 ISRINEREI 353


>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 345 KLNNTIRSSPEVTLTAYIADDAKKPD 422
           K+N  +  S   T T Y A DAK PD
Sbjct: 30  KVNEHVLKSEPFTKTYYFARDAKNPD 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,046
Number of Sequences: 5004
Number of extensions: 51321
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)