Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h22
         (694 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC052973-1|AAH52973.1| 1187|Homo sapiens PCDH12 protein protein.       30   9.0  
BC042634-1|AAH42634.1| 1187|Homo sapiens PCDH12 protein protein.       30   9.0  
AY358428-1|AAQ88794.1| 1184|Homo sapiens PCDH12 protein.               30   9.0  
AK027282-1|BAB55016.1|  390|Homo sapiens protein ( Homo sapiens ...    30   9.0  
AK024140-1|BAB14837.1| 1187|Homo sapiens protein ( Homo sapiens ...    30   9.0  
AF240635-1|AAF73962.1| 1184|Homo sapiens vascular endothelial ca...    30   9.0  
AF231025-1|AAF61931.1| 1184|Homo sapiens protocadherin 12 protein.     30   9.0  
AB026893-1|BAA95162.1| 1184|Homo sapiens vascular cadherin-2 pro...    30   9.0  

>BC052973-1|AAH52973.1| 1187|Homo sapiens PCDH12 protein protein.
          Length = 1187

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 345 KLNNTIRSSPEVTLTAYIADDAKKPDEKKYEIAVLDSNQNDSAVNENNRSL 497
           +L+  I S  ++ LTAY   +  K      ++ VLDSN N  A  E++ +L
Sbjct: 201 ELDREIHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDNSPAFAESSLAL 251


>BC042634-1|AAH42634.1| 1187|Homo sapiens PCDH12 protein protein.
          Length = 1187

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 345 KLNNTIRSSPEVTLTAYIADDAKKPDEKKYEIAVLDSNQNDSAVNENNRSL 497
           +L+  I S  ++ LTAY   +  K      ++ VLDSN N  A  E++ +L
Sbjct: 201 ELDREIHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDNSPAFAESSLAL 251


>AY358428-1|AAQ88794.1| 1184|Homo sapiens PCDH12 protein.
          Length = 1184

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 345 KLNNTIRSSPEVTLTAYIADDAKKPDEKKYEIAVLDSNQNDSAVNENNRSL 497
           +L+  I S  ++ LTAY   +  K      ++ VLDSN N  A  E++ +L
Sbjct: 201 ELDREIHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDNSPAFAESSLAL 251


>AK027282-1|BAB55016.1|  390|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14376 fis, clone HEMBA1001661, weakly similar to
           CADHERIN-RELATED TUMOR SUPPRESSOR PRECURSOR. ).
          Length = 390

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 345 KLNNTIRSSPEVTLTAYIADDAKKPDEKKYEIAVLDSNQNDSAVNENNRSL 497
           +L+  I S  ++ LTAY   +  K      ++ VLDSN N  A  E++ +L
Sbjct: 201 ELDREIHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDNSPAFAESSLAL 251


>AK024140-1|BAB14837.1| 1187|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14078 fis, clone HEMBB1002044, moderately
           similar to Mus musculus mRNA for vascular cadherin-2. ).
          Length = 1187

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 345 KLNNTIRSSPEVTLTAYIADDAKKPDEKKYEIAVLDSNQNDSAVNENNRSL 497
           +L+  I S  ++ LTAY   +  K      ++ VLDSN N  A  E++ +L
Sbjct: 201 ELDREIHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDNSPAFAESSLAL 251


>AF240635-1|AAF73962.1| 1184|Homo sapiens vascular endothelial
           cadherin 2 protein.
          Length = 1184

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 345 KLNNTIRSSPEVTLTAYIADDAKKPDEKKYEIAVLDSNQNDSAVNENNRSL 497
           +L+  I S  ++ LTAY   +  K      ++ VLDSN N  A  E++ +L
Sbjct: 201 ELDREIHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDNSPAFAESSLAL 251


>AF231025-1|AAF61931.1| 1184|Homo sapiens protocadherin 12 protein.
          Length = 1184

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 345 KLNNTIRSSPEVTLTAYIADDAKKPDEKKYEIAVLDSNQNDSAVNENNRSL 497
           +L+  I S  ++ LTAY   +  K      ++ VLDSN N  A  E++ +L
Sbjct: 201 ELDREIHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDNSPAFAESSLAL 251


>AB026893-1|BAA95162.1| 1184|Homo sapiens vascular cadherin-2
           protein.
          Length = 1184

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 345 KLNNTIRSSPEVTLTAYIADDAKKPDEKKYEIAVLDSNQNDSAVNENNRSL 497
           +L+  I S  ++ LTAY   +  K      ++ VLDSN N  A  E++ +L
Sbjct: 201 ELDREIHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDNSPAFAESSLAL 251


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,493,003
Number of Sequences: 237096
Number of extensions: 1648047
Number of successful extensions: 3897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3897
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)