Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h22
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23178-2|AAK68302.1|  460|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein (spl...    28   5.5  
Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...    28   7.3  
U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U23178-2|AAK68302.1|  460|Caenorhabditis elegans Hypothetical
           protein F08B1.3 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 387 TAYIADDAKKPDEKKYEIAVLDSN-QNDSAVNENNRSLGSKICHVCPHPCEFAKHS 551
           T  +A  A  PDE  ++    D+   NDS +  N  S    +   CP P    KHS
Sbjct: 268 TMKLAARASSPDEIIFQEDDEDALIDNDSLLTSNGNSKSEDVLRTCPQPRRKNKHS 323


>U23484-2|AAC46767.1|  196|Caenorhabditis elegans Sr protein
           (splicing factor) protein4, isoform a protein.
          Length = 196

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/55 (40%), Positives = 28/55 (50%)
 Frame = -2

Query: 636 RSSLSPQL*ARSSRICRTLASPARRPVGRSVSRTHTGEDKRDISSTRDCGCFRSR 472
           R S SP+  +RS R  R+  SP R    RS +R+    D+RD    RD    RSR
Sbjct: 114 RRSRSPRRRSRSPRYSRS-RSPRR---SRSRTRSPPSRDRRDSPDRRDNSRSRSR 164


>Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical
           protein K08F9.3 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 595 NLSHSCFTSEAASRSECFANSH 530
           NL+H+ FTSE  + +  F NSH
Sbjct: 130 NLTHAVFTSEFVNENGSFENSH 151


>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 17  LRQASCTRSQLIQAETIIAVLCLCETKLKTTIVYSQ***VLKLNLIDEL 163
           + +A+ TRS  +  E ++AV CL E   K  + Y     VLK  L++ L
Sbjct: 623 MNRAAATRSNAVMEEALLAVACLAEHLGKGFLSYMN---VLKPYLLEGL 668


>U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical
           protein C01B10.8 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +3

Query: 393 YIADDAKKPDEKKYEIAVLDSNQNDSA 473
           ++ + AKKP+E+KY++  +D + + +A
Sbjct: 519 HLQETAKKPEEEKYDVIFVDVSGSQNA 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,958,482
Number of Sequences: 27780
Number of extensions: 298410
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)