Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h22
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.4  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 399 ADDAKKPDEKKYEIAVLDSNQNDSAVNENNRSLGSKIC 512
           +D++K+ ++KK E  ++D  +ND    EN     S +C
Sbjct: 82  SDNSKEVNDKKEENFIVDRLRNDLFECENKEK--SNVC 117


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 22  PGKLYAVSTHTSRNNNSGFVFMRNKTKNND---SLFTMIVSFE 141
           P  + ++S +T  NNN  + +  N   NN+    L+  I++ E
Sbjct: 78  PKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIE 120


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 22  PGKLYAVSTHTSRNNNSGFVFMRNKTKNND---SLFTMIVSFE 141
           P  + ++S +T  NNN  + +  N   NN+    L+  I++ E
Sbjct: 78  PKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINIE 120


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 233 QSINITDKIQNNANYYVF 180
           Q ++++ K+Q N  Y+VF
Sbjct: 229 QRLSLSFKLQRNIGYFVF 246


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 208 YKITRIIMCFVYYNI 164
           + I  IIM F+YYNI
Sbjct: 352 FYIPCIIMVFLYYNI 366


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 269 PTQSNVSFVYTTQSINIT 216
           PT++ + FVYT   I +T
Sbjct: 929 PTETGLPFVYTFNVIKLT 946


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 447 LDSNQNDSAVNENNRS 494
           +++NQND+  N NN++
Sbjct: 415 VNNNQNDNIQNTNNQN 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,550
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)