Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h21
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0023 - 19000591-19001234,19003322-19003496                       50   2e-06
04_03_0792 + 19693957-19694146,19695614-19696260                       49   3e-06
10_08_0406 - 17688069-17690643,17691065-17691132                       29   2.3  
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090...    29   3.0  
06_03_1247 - 28676578-28676730,28677019-28677177,28677314-286774...    29   4.0  
04_04_0359 + 24679907-24680146,24680511-24680939,24681111-246824...    28   5.2  

>02_04_0023 - 19000591-19001234,19003322-19003496
          Length = 272

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 360 NPYRKDQYKDVRKTRWGAGD-EKSGVTYTIGFFGLLCGSYAVKSELVHFISYMXXXXXXX 536
           NP  K  Y +    R+  GD  K    Y +   G    +  ++  ++ F+  M       
Sbjct: 86  NPSAKIVYDEYNHERYQPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVL 145

Query: 537 XXXSIEVDLTKITPGACVSYKWRGKPLFI 623
              S+EVDL+ I PG  V+ KWRGKP+FI
Sbjct: 146 ALASLEVDLSSIEPGTTVTVKWRGKPVFI 174


>04_03_0792 + 19693957-19694146,19695614-19696260
          Length = 278

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = +3

Query: 360 NPYRKDQYKDVRKTRWGAGD-EKSGVTYTIGFFGLLCGSYAVKSELVHFISYMXXXXXXX 536
           NP  K  Y +    R   GD  K    Y +   G    +  ++  ++ F+  M       
Sbjct: 92  NPNPKVVYDEYNHERHAPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVL 151

Query: 537 XXXSIEVDLTKITPGACVSYKWRGKPLFI 623
              S+EVDL+ I PG  V+ KWRGKP+FI
Sbjct: 152 ALASLEVDLSSIEPGTTVTVKWRGKPVFI 180


>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = +3

Query: 195 REVRRKRASVNKSDAPLTRFCRNNLEQIPSL----SMWVQVRYHKECPRLH---RDIEFP 353
           ++ + K+    K  + L+R+C   + QIP L      WV  RY      LH   R +  P
Sbjct: 706 KKKKEKKEDDRKIASVLSRYCMFLVAQIPELLPDDETWVSDRYGDTASALHLASRRVVCP 765

Query: 354 NFNPYRKDQYKDVRKTRW 407
                +K     VR +RW
Sbjct: 766 TSRRRKKAIAVAVRSSRW 783


>07_01_1116 +
           10308029-10308111,10308575-10308737,10308996-10309062,
           10309120-10309375,10309658-10309781,10310039-10310077
          Length = 243

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 165 CQNLTCIKTVREVRRKRASVNKSDAPLTRFCRNNLEQIPSLSMWVQVRYH 314
           C +  CIK  R+  R+  S      P   FCR +L++I S  +WV   Y+
Sbjct: 178 CSHAMCIKCYRDWYRRSES-----CP---FCRGSLKRIRSRDLWVLTNYN 219


>06_03_1247 -
           28676578-28676730,28677019-28677177,28677314-28677412,
           28677504-28677554,28677712-28678983,28680209-28680412,
           28682330-28682439,28684962-28685067
          Length = 717

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 368 QERSIQGCEKDKMGCGRREVRSDLHDWLLRIALWIVCCKIRA 493
           QE  I+G E  +M C  +   S +H+W LR   W   CK  A
Sbjct: 667 QEEYIEGEEVGRMQCEHQYHVSCIHEW-LRQKNWCPICKTSA 707


>04_04_0359 + 24679907-24680146,24680511-24680939,24681111-24682402,
            24682486-24682737,24682818-24682928,24683016-24683076,
            24683178-24683270,24683348-24683533
          Length = 887

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 213  RASVNKSDAPLTRFCRNNLEQ--IPSLSMWVQVRYHKECPRLHRDIEFPNFNPYRKDQYK 386
            R   N  D P    CR + +   IP++   +    H EC  +  D   P   P   D++K
Sbjct: 819  RYRTNAEDLPRLE-CRTSFDDTGIPNVQRDLCHFIHHECCHVKEDFFDPEGVPATSDEFK 877

Query: 387  DVRK 398
            D+R+
Sbjct: 878  DLRE 881


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,281,025
Number of Sequences: 37544
Number of extensions: 348120
Number of successful extensions: 807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)