Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h19
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    29   0.20 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   5.8  
SPCP20C8.02c |||S. pombe specific UPF0321 family protein 1|Schiz...    25   5.8  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 266 YVCFCCLFLKNVNKKT 313
           YVCFCC F+ N   K+
Sbjct: 8   YVCFCCAFISNTTSKS 23


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 321 HRLVFLLTFFKNKQQKQT*RLTLIIPSL 238
           H L+ L TF KNK Q    +  ++IP L
Sbjct: 199 HNLMDLPTFKKNKPQTMKNKFYMVIPFL 226


>SPCP20C8.02c |||S. pombe specific UPF0321 family protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 263 LYVCFCCLFLKNVNKKTNL 319
           L  C CC+F+K V  + NL
Sbjct: 3   LLFCICCVFIKLVLAEVNL 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,421,981
Number of Sequences: 5004
Number of extensions: 22711
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)