Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h19
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0335 - 12629472-12629930,12630009-12631481,12631578-12631628     27   4.2  
09_04_0433 - 17512299-17512340,17512832-17512838,17513389-175135...    27   7.3  
01_06_0782 + 31969677-31969767,31969863-31969960,31970059-319702...    26   9.7  

>05_03_0335 - 12629472-12629930,12630009-12631481,12631578-12631628
          Length = 660

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 38  WCK*FIFLSTTLGPDTNL*FQFVLKHLKALK 130
           W + F+F  ++ GP TN  +QFV K L++ K
Sbjct: 210 WLEKFLFYGSSCGPTTN--WQFVAKALESKK 238


>09_04_0433 -
           17512299-17512340,17512832-17512838,17513389-17513574,
           17513656-17513819,17514732-17514837,17514922-17515013,
           17515277-17515390,17515399-17515528,17515604-17515765,
           17516460-17516512,17516605-17516697
          Length = 382

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 312 VFLLTFFKNKQQKQT*RLTLIIPSLNLNL 226
           + +LTF KN+ Q Q     L++P +N+ L
Sbjct: 324 IVVLTFCKNESQYQVTVTVLLVPLINITL 352


>01_06_0782 +
           31969677-31969767,31969863-31969960,31970059-31970235,
           31970367-31970467,31970626-31970701,31970827-31970886,
           31970979-31971215,31971612-31971686,31971981-31972039,
           31972110-31972201,31972463-31972623,31972964-31973176
          Length = 479

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 382 PIIILFFKLSQYLQNI 335
           P++ILF  LSQYL+N+
Sbjct: 191 PMLILFVVLSQYLKNV 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,351,685
Number of Sequences: 37544
Number of extensions: 98796
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)