Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h19
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80445-7|AAB37798.1|  368|Caenorhabditis elegans Hypothetical pr...    31   0.23 
U80437-6|AAB37621.1|  368|Caenorhabditis elegans Hypothetical pr...    31   0.23 
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>U80445-7|AAB37798.1|  368|Caenorhabditis elegans Hypothetical
           protein C50F2.5 protein.
          Length = 368

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 233 KFNDGIISVSLYVCFCCLFLKNVNKKTNLC 322
           KF +G IS     CFC     N+ K TN C
Sbjct: 311 KFRNGSISTYYQFCFCMAVCLNIGKHTNWC 340


>U80437-6|AAB37621.1|  368|Caenorhabditis elegans Hypothetical
           protein C43E11.5 protein.
          Length = 368

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 233 KFNDGIISVSLYVCFCCLFLKNVNKKTNLC 322
           KF +G IS     CFC     N+ K TN C
Sbjct: 311 KFRNGSISTYYQFCFCMAVCLNIGKDTNWC 340


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 266 YVCFCCLFLKNVNKKTNLCID 328
           ++C  CL ++ VNK TN C++
Sbjct: 529 WICESCLDIQYVNKTTNQCMN 549


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 266 YVCFCCLFLKNVNKKTNLCID 328
           ++C  CL ++ VNK TN C++
Sbjct: 529 WICESCLDIQYVNKTTNQCMN 549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,637,062
Number of Sequences: 27780
Number of extensions: 124355
Number of successful extensions: 318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)