Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h18
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623...    33   0.32 
04_04_1136 - 31142742-31142806,31143245-31143325,31143432-311435...    32   0.56 
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     28   6.9  
12_02_1159 + 26585042-26585441,26585520-26585608,26585670-265857...    28   9.2  
11_01_0608 + 4862663-4862974,4863239-4863285,4863592-4863775           28   9.2  

>08_01_0705 +
           6231220-6231390,6231900-6231954,6232043-6232194,
           6232252-6232335,6232614-6232797,6232885-6232988,
           6233109-6233183,6233366-6233405,6233495-6233577,
           6233687-6233764,6233868-6234011,6234093-6234160,
           6234831-6234945,6235045-6235201,6235311-6235408
          Length = 535

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 521 LCDILKPISFAKVKTANGSLYKIPDCLNFMIL 426
           L +IL+   FA VK ANG+ Y  PD    M+L
Sbjct: 449 LFEILREEEFAPVKNANGATYDTPDSARLMLL 480


>04_04_1136 -
           31142742-31142806,31143245-31143325,31143432-31143588,
           31143695-31143809,31144016-31144083,31144171-31144314,
           31144393-31144470,31144555-31144637,31144729-31144768,
           31144993-31145067,31145202-31145314,31145839-31145878,
           31145977-31146128,31146351-31146405,31146717-31146776,
           31147005-31147268,31148379-31148436,31148606-31148637
          Length = 559

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 521 LCDILKPISFAKVKTANGSLYKIPDCLNFMIL 426
           L ++L+   FA VK ANG+ Y  PD    M+L
Sbjct: 457 LFEVLREEEFAPVKNANGASYDTPDSAKLMLL 488


>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +1

Query: 178 IAAYVDKRELQRDVNPITCDNDLVEKVMNNYVIVKRILRVLSWQE-----KMICKHVCSL 342
           +  YV   E    V  +T   D  + V  +YV   +++RVL  QE         KH+C L
Sbjct: 536 LTGYVTSDEEFSRVRSLTVFGDTSDTV--SYVRKCKLIRVLDLQECNDFADDHLKHICKL 593

Query: 343 WHSAVLA 363
           WH   L+
Sbjct: 594 WHLKYLS 600


>12_02_1159 +
           26585042-26585441,26585520-26585608,26585670-26585720,
           26586189-26586282,26586451-26586512,26586589-26586671,
           26586793-26586901,26587010-26587051,26587152-26587316,
           26588165-26588341,26588820-26588984,26589069-26589332
          Length = 566

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 190 VDKRELQRDVNPITCDNDLVEKVMNNYVIVKRILRVLSW 306
           VD  ++  D +P T D DL++K +  Y      L +L W
Sbjct: 108 VDTSDILLDTDPGTLDRDLLKKKLETYKKAFPGLAILGW 146


>11_01_0608 + 4862663-4862974,4863239-4863285,4863592-4863775
          Length = 180

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 577 MVDVLQNNVSAPKNCMLAVRSNCISFMSLPSSPT 678
           M DV     S P++C+  V +N +   +LPS PT
Sbjct: 107 MFDVSVTGQSNPRSCIWFVVTNLVDADALPSKPT 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,143,783
Number of Sequences: 37544
Number of extensions: 371525
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)