Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h18
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038604-4|AAO38680.1|  134|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF038604-3|AAB92012.1|  161|Caenorhabditis elegans Hypothetical ...    29   4.7  
AC084159-12|ABO16466.1|  377|Caenorhabditis elegans F-box a prot...    29   4.7  
Z81454-7|CAB76407.1|  378|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    28   8.2  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    28   8.2  

>AF038604-4|AAO38680.1|  134|Caenorhabditis elegans Hypothetical
           protein B0546.4b protein.
          Length = 134

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 494 FAKVKTANGSLYKIPDCLNFMILFDEACCSAMTQSAGPCCSFSSA 360
           FA +  A GSLY    C  ++    E    A T S GP   F  A
Sbjct: 5   FAGICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTGPATLFKRA 49


>AF038604-3|AAB92012.1|  161|Caenorhabditis elegans Hypothetical
           protein B0546.4a protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 494 FAKVKTANGSLYKIPDCLNFMILFDEACCSAMTQSAGPCCSFSSA 360
           FA +  A GSLY    C  ++    E    A T S GP   F  A
Sbjct: 5   FAGICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTGPATLFKRA 49


>AC084159-12|ABO16466.1|  377|Caenorhabditis elegans F-box a protein
           protein 222 protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +1

Query: 274 IVKRILRVLSWQEKMICKHVCSLWHSAVLALLKEQQGPADCVIALQHASSKSIMKFKQSG 453
           I++RIL  L +++KM+ + VC +    V     E    A   ++ +     + ++F +  
Sbjct: 79  ILQRILNELCFRDKMVLQKVCRILRKVV----PEIDAAAHSAVSFRMCRDWTFLEFSKHE 134

Query: 454 ILYNE 468
           I+Y E
Sbjct: 135 IVYRE 139


>Z81454-7|CAB76407.1|  378|Caenorhabditis elegans Hypothetical
           protein B0391.11 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +1

Query: 274 IVKRILRVLSWQEKMICKHVCSLWHSAVLALLKEQQGPADCVIALQHASSKSIMKFKQSG 453
           I++RIL  L +++KM+ + VC +    V     E    A   ++ +     + ++F +  
Sbjct: 79  ILQRILNELCFRDKMVLQKVCRILRKVV----PEIDAVAHSAVSFRMCRDWAFLEFSKHE 134

Query: 454 ILYNE 468
           I+Y E
Sbjct: 135 IVYRE 139


>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 635 GVTVSHSCHFRHPQLMSLRLPRKCSCVQIHSL 730
           G      CHFR P+  S  + + C+   IHSL
Sbjct: 126 GANTPRRCHFRRPKSTS-EMHQSCTSATIHSL 156


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion
           transporter ABTS-3 protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 635 GVTVSHSCHFRHPQLMSLRLPRKCSCVQIHSL 730
           G      CHFR P+  S  + + C+   IHSL
Sbjct: 126 GANTPRRCHFRRPKSTS-EMHQSCTSATIHSL 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,329,136
Number of Sequences: 27780
Number of extensions: 359160
Number of successful extensions: 796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)