Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h17
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   5.1  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   6.7  
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    24   8.9  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    24   8.9  

>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = +1

Query: 100 EILLKIHNRMKARYLTFFSYIGTGFRSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLN 279
           E + K+   ++ RY     ++  G    + + LK+   L +  S +  M  +L+K+ SLN
Sbjct: 155 ETIEKLRQFLQTRYQPATKFLDLGNLQQDPL-LKQMGILAEA-STKSKMFPALMKVASLN 212

Query: 280 YPNV 291
           +P+V
Sbjct: 213 FPDV 216


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 100 EILLKIHNRMKARYLTFFSYIGTGFRSSEKIWLKENRNLPD 222
           E L+K+      + + F   +   F +SEK  ++EN+ LP+
Sbjct: 457 EALVKVIPHYHNKLIDFSQVLQLVFSASEKFPIQENQPLPE 497


>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 204

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 36 DKNYCYYC 59
          DK YCYYC
Sbjct: 14 DKEYCYYC 21


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 190 IWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSR*AKCGDY*N 333
           +W +      +PE++  + +  L  +  + YPN  L++  AK   Y N
Sbjct: 404 VWYRRLARKRNPEAMWKLSQFYLNGVDDVIYPNPELANEWAKAAAYKN 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,687
Number of Sequences: 5004
Number of extensions: 29957
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)