Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h17
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1079 - 11223247-11223336,11223606-11223717,11224743-112248...    29   1.2  
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756...    29   2.2  

>12_01_1079 -
           11223247-11223336,11223606-11223717,11224743-11224825,
           11226061-11226173,11226261-11226337,11228626-11228719,
           11229072-11229160,11230485-11230560,11231637-11231808
          Length = 301

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 151 FSYIGTGFRSSEKIWLKENRNLPDPESVQGMMELSLLKLRSL 276
           FSY  TG  +     ++ +  LP PE V   ++ +L++LR+L
Sbjct: 90  FSYFSTGLSNVGGASVRNDILLPAPEMVDKQVDATLIRLRAL 131


>11_02_0032 +
           7564153-7564719,7564844-7565128,7565207-7565524,
           7565612-7565839,7566662-7566762,7566852-7566933,
           7567230-7567364,7567460-7567516,7568030-7568167
          Length = 636

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 157 YIGTGFRSSEKIWLKENR--NLPDPESVQGMMELSLLKLRSLNYPNV 291
           Y     ++ + + LK+ R  NL DPESV+  M   +L LR LN+PNV
Sbjct: 199 YKARDLKTGKIVALKKVRFVNL-DPESVR-FMAREILVLRKLNHPNV 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,271,128
Number of Sequences: 37544
Number of extensions: 151235
Number of successful extensions: 193
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)