Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h17
         (438 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034304-1|AAH34304.1|  303|Homo sapiens pseudouridylate synthas...    32   0.75 
AL139287-3|CAI23172.1|  303|Homo sapiens pseudouridylate synthas...    32   0.75 
AK075292-1|BAC11527.1|  303|Homo sapiens protein ( Homo sapiens ...    32   0.75 

>BC034304-1|AAH34304.1|  303|Homo sapiens pseudouridylate
           synthase-like 1 protein.
          Length = 303

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 127 MKARYLTFFSYIGTGFRSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSR 306
           ++ARYL +F Y+GT F     +     R       VQ  +E +  +L S+     T+SSR
Sbjct: 10  VRARYLVYFQYVGTDFNGVAAV-----RGTQRAVGVQNYLEEAAERLNSVEPVRFTISSR 64


>AL139287-3|CAI23172.1|  303|Homo sapiens pseudouridylate
           synthase-like 1 protein.
          Length = 303

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 127 MKARYLTFFSYIGTGFRSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSR 306
           ++ARYL +F Y+GT F     +     R       VQ  +E +  +L S+     T+SSR
Sbjct: 10  VRARYLVYFQYVGTDFNGVAAV-----RGTQRAVGVQNYLEEAAERLNSVEPVRFTISSR 64


>AK075292-1|BAC11527.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90811 fis, clone Y79AA1000888, weakly similar to
           TRNA PSEUDOURIDINE SYNTHASE A (EC 4.2.1.70). ).
          Length = 303

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 127 MKARYLTFFSYIGTGFRSSEKIWLKENRNLPDPESVQGMMELSLLKLRSLNYPNVTLSSR 306
           ++ARYL +F Y+GT F     +     R       VQ  +E +  +L S+     T+SSR
Sbjct: 10  VRARYLVYFQYVGTDFNGVAAV-----RGTQRAVGVQNYLEEAAERLNSVEPVRFTISSR 64


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,729,243
Number of Sequences: 237096
Number of extensions: 929943
Number of successful extensions: 1014
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)