Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h11
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical pr...    32   0.38 
AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical ...    31   0.88 
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    28   6.2  
AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine r...    28   8.2  

>Z46793-2|CAA86771.1|  322|Caenorhabditis elegans Hypothetical
           protein C56G7.3 protein.
          Length = 322

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 30/107 (28%), Positives = 47/107 (43%)
 Frame = -3

Query: 660 PHRPIRNFVPKHLTKFSDFPLAVFECAITRILC*YHRSCRFSCGPNRIRIIS*FFRMGLS 481
           P   +R  V    T+ +DFPLAV    IT IL    +        N I  +  FF   L 
Sbjct: 209 PANLLRAIVLLATTEPNDFPLAVVSINITSILLTQLKKGALDNFGNEIEGLYPFF-SALH 267

Query: 480 DMSS*GYFMFYSCLYCSSPNTVSITFATVLDILVRNDMSIIFLVRPS 340
             +   +   Y    C+  NT +I F+ +   L ++ +S+I L+ P+
Sbjct: 268 ASAMCRFCSIYKSQKCTLANTQTI-FSEITRQLEKSPLSLIMLLNPT 313


>AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical
           protein F19B2.8 protein.
          Length = 330

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
 Frame = -2

Query: 508 ILVFPNGLI*HVFLRIFYVLLVPLLFVSKHCFYNFCDSVRYLGSKRYV--HNFPCQAFAH 335
           IL++   L    +L I + LLV LL +SK   Y +  + RY+   +Y     +    F++
Sbjct: 116 ILIYSQVLTILTYLTITFQLLVSLLAISKFLIYFYPSTERYVVLSKYKIWACYLISLFSY 175

Query: 334 SVQSIMNVVLTESNQTTYFKVICYLKSQLL*SELLWSP 221
            ++ + ++++   +      +I +    L+ + LL+ P
Sbjct: 176 DIEEVFDLLIGFDSPILTEDIIRFHSILLIATSLLYIP 213


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 472 FLRIFYVLLVPLLFVSKHC 416
           F  IFYVL++  LFV KHC
Sbjct: 282 FFDIFYVLILFKLFVLKHC 300


>AF016449-10|AAG24001.2|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein5 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 465 GYFMFYSCLYCSSPNTVSITFATVLDILVRNDMSIIFL 352
           GYF FY   +C  P  + IT + ++   V N ++ I +
Sbjct: 93  GYFAFYGVSFCQQPIFLFITGSFIIGCWVSNCVASILM 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,727,507
Number of Sequences: 27780
Number of extensions: 355794
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)