Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h08
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    29   0.63 
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    29   0.83 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   0.83 
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   2.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   2.5  
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    26   5.9  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.8  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   7.8  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   7.8  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   7.8  

>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 267 RLQKRLLQIKMKYQINAYPTYKHLKRKLKIQTRLSLQMRIY 389
           R+ +R +     Y +  YP++  LK   KI+TRLSL  +++
Sbjct: 165 RISERSIIRDSIYMLIGYPSFFFLKNGSKIETRLSLLPKLH 205


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +2

Query: 407 NEIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVSSEHVK 580
           NE+ +   Q + L AF +G + + DEE  R +   + A E   + I++ G+++SE  K
Sbjct: 95  NELNDPIVQEKILRAFEQGHVDEEDEE--RCRKMASDASEEKDRKIEE-GELTSEEEK 149


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 20/85 (23%), Positives = 41/85 (48%)
 Frame = +2

Query: 407 NEIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVSSEHVKNA 586
           +E++ +   ++E     +    +V EE+   K Q+ I++ ++ +  +KY  V SE ++  
Sbjct: 296 SELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENSLRELQEKYDSVVSE-LQVV 354

Query: 587 KEKFSQLKSELHGLIYSMFPNTSAL 661
           KE  +   S   GL   +    SA+
Sbjct: 355 KENKNTSVSAGVGLFSPLAQKLSAV 379


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +2

Query: 410 EIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQ-VSSEHVKNA 586
           E K++  + EE+    K      D EI+R  N  T  ++ + KPI    + +++ ++ N 
Sbjct: 194 ESKKRKFEEEEIDREAKSLFSSQDGEIIRRLNAETTVEKELPKPIDLVSEKLATSNIPNF 253

Query: 587 K-EKFSQLKSE 616
           +  K+++ K E
Sbjct: 254 QPPKYAKRKME 264


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = +2

Query: 464  SIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVSSEHVKNAKEKFSQLKS 613
            +IR+++E++MRL +++ + Q +    +Q+  + ++      +   SQL S
Sbjct: 1001 NIRELNEKLMRLDDELLLKQRSYDTKVQELREENASLKDQCRTYESQLAS 1050


>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 386 LLTSQFLNEI-KEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQV 562
           +LT + L E    + GQ+ + T+F +  +R+V       +  + + + +  K  +K  + 
Sbjct: 14  VLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKK 73

Query: 563 SSEHVKNAKEKFSQLKS 613
               +K AK K  +L S
Sbjct: 74  RLGTLKRAKGKIEELTS 90


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 146 TNSKLFKMTSKHNAETLDALKREIKTLQNNCLNV 247
           T SK+F  T    A T + +   + T  NNCL +
Sbjct: 124 TVSKMFSSTVGRPAVTRELVTPNLPTFVNNCLRI 157


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 530 MSKPIQKYGQVSSEHVKNAKEKFSQLKSELH 622
           +S+P QK+    SEHV+ A+++    KS  H
Sbjct: 378 ISRPGQKFPSWLSEHVQLARDEEKAFKSIYH 408


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 386 LLTSQFLNEIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVS 565
           +L +Q+   ++    ++ +     +  I   D+ I  LKNQI   +       + Y Q+ 
Sbjct: 433 VLLNQYDARVRTLENELSQAGVNLQEQIHQNDDLIESLKNQILTWKNKYEALAKLYTQLR 492

Query: 566 SEHVK-NAKEKFSQLKS 613
            EH+   +K K  QLK+
Sbjct: 493 QEHLDLLSKYKQIQLKA 509


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 419 EKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQ-KYGQVSSEHVKNAKEK 595
           E  G IE  T    G+ R+  ++ +R    I   +  + + ++ KYG   +  VKN+K +
Sbjct: 477 EDLGSIENKTVEDTGN-REKSKKSLR--KDIREKKRKIDEYVEEKYGVPEAVIVKNSKFR 533

Query: 596 FSQLKSELHGL 628
           + Q+  E  GL
Sbjct: 534 YQQVAPETFGL 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,111
Number of Sequences: 5004
Number of extensions: 45178
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)