Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30h08
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883 33 0.21
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804... 30 2.0
03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612... 29 2.6
06_03_1451 + 30252366-30252373,30252621-30252867,30253441-302538... 29 4.6
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 4.6
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 28 6.0
>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
Length = 424
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 143 FTNSKLFKMTSKHNAETLDALKREIKTLQNNCLNVC--NIIENAPPETPSANQDEISDKC 316
F +SK+F E+ K + + + + + VC + +E A P+TPS N +I +C
Sbjct: 17 FLDSKMFLSFLGLVLESSKQNKHDPENRRVSSVTVCKQSQLEEATPQTPSMNSIDIKKRC 76
Query: 317 LSYI 328
L Y+
Sbjct: 77 LKYL 80
>05_06_0193 +
26279105-26279229,26279725-26279833,26280362-26280437,
26280527-26281472,26281564-26281615,26281945-26282067,
26282144-26282219,26282308-26282492,26282615-26282806,
26282895-26282963,26283745-26283954,26285602-26285751,
26286283-26286344,26286428-26286503,26286575-26286745
Length = 873
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/94 (21%), Positives = 46/94 (48%)
Frame = +2
Query: 404 LNEIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVSSEHVKN 583
L ++ E E A G D+++++ +L + ++A+ +SK + + E +K+
Sbjct: 245 LGDLLETATNKVENAAMVLGRNHDLEDKVDKL--EASLAEANISKFSCYFVDLLQEKIKS 302
Query: 584 AKEKFSQLKSELHGLIYSMFPNTSALIIEFMGQL 685
+E+F E+H I ++ N+ A + + +L
Sbjct: 303 VEERFQVCNHEMHSQI-ELYENSIAEFHDILSKL 335
>03_02_0171 +
6126685-6127107,6127237-6127581,6127701-6127997,
6129763-6129990,6130716-6131036
Length = 537
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = +2
Query: 557 QVSSEHVKNAKEKFSQLKSELH 622
QVS +HV++ ++K S+L+S+LH
Sbjct: 431 QVSEQHVEDLQKKISELESKLH 452
>06_03_1451 +
30252366-30252373,30252621-30252867,30253441-30253893,
30253971-30254555
Length = 430
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 410 EIKEKTGQIEE-LTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVSSEHVKNA 586
+++EK +IE LT F EE R+K IT+A SK + G SSE
Sbjct: 102 QLREKQEKIERVLTLFKASKSGPFAEESTRVKGIITVAGSLSSKNKKDSGPDSSETNSGI 161
Query: 587 KEKF 598
+F
Sbjct: 162 SSQF 165
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +2
Query: 407 NEIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVSSEHVKNA 586
NE+ EK QIE+L S R +DE+ R ++ AQ+ + + + E + +A
Sbjct: 1072 NEVSEKVIQIEKLETELASSKRALDEQYKRWRS----AQDNYERQVILQSETIQE-LTSA 1126
Query: 587 KEKFSQLKSEL 619
++ S L+ E+
Sbjct: 1127 SKELSSLQQEI 1137
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/49 (24%), Positives = 31/49 (63%)
Frame = +2
Query: 404 LNEIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQK 550
L++I+E+ ++EE + +I + +E++ LKN + +E +S+ +++
Sbjct: 348 LDKIREENRKLEEQNNSSISAIIRLQDEVISLKNAQRLLEEEVSRHVEE 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,085,330
Number of Sequences: 37544
Number of extensions: 227964
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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