Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30h06
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...   109   4e-25
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   2.5  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.3  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score =  109 bits (262), Expect = 4e-25
 Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 8/137 (5%)
 Frame = +3

Query: 297 SSQEPDVLFEALNNAGIVTLNRPKALNSLNTSMVSKLLPQLQEWEKSK--SLVIIKGAGE 470
           +S    VL+E+ N A I TLNRPK LN++N  M+  +LP+L   E+S    ++I+KG G 
Sbjct: 52  TSSNDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNG- 110

Query: 471 KAFCAGGDVKAAIDKMEGPRF------FHTEYNVNYLIGNYKIPYIAFINGITMGGGLGL 632
           ++F +GGD+KAA   ++  +       F  EY +++ +  Y+ P +A +NGITMGGG GL
Sbjct: 111 RSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGL 170

Query: 633 SVHGRYRVATEKTLIAM 683
           ++H  +R+A E T+ AM
Sbjct: 171 AMHVPFRIACEDTMFAM 187


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 378 SLNTSMVSKLLPQLQEWEKSKSLV 449
           +L++S +S+L PQL+EW  SK  V
Sbjct: 703 ALSSSPLSELHPQLREWFSSKQSV 726


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 273 LPLLRRTMS-SQEPDVLFEALNNAGIVTLNRPKALN 377
           LP++  T+  S  PDV+    N+AGI  L   + +N
Sbjct: 187 LPIIAATIQLSDLPDVILNFYNSAGITPLESSRLIN 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,811
Number of Sequences: 5004
Number of extensions: 59250
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)