Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30h05
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83218-7|CAB05685.2| 283|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z81139-8|CAB03483.2| 361|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81062-15|CAB02950.2| 361|Caenorhabditis elegans Hypothetical p... 29 4.2
Z81041-6|CAB02788.1| 336|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81029-2|CAB02696.1| 220|Caenorhabditis elegans Hypothetical pr... 28 5.5
U53339-7|AAA96203.1| 345|Caenorhabditis elegans Serpentine rece... 28 5.5
AC199166-1|ABO33245.1| 343|Caenorhabditis elegans F-box a prote... 28 5.5
AC006675-2|AAK84549.1| 333|Caenorhabditis elegans Serpentine re... 28 5.5
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z32679-9|CAA83593.3| 337|Caenorhabditis elegans Hypothetical pr... 28 7.3
AC199172-5|ABO33273.1| 305|Caenorhabditis elegans F-box a prote... 28 7.3
AC199172-2|ABO33275.1| 305|Caenorhabditis elegans F-box a prote... 28 7.3
Z83128-4|CAB05639.1| 348|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 27 9.7
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 27 9.7
>Z83218-7|CAB05685.2| 283|Caenorhabditis elegans Hypothetical
protein C31A11.3 protein.
Length = 283
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 169 CSLYFGMFRVLAVYFDSIFILFYVMLFIMIPL*NI--LLYFAFGLDGLY 29
C+L+ F + A + + I +LF ++ +IP+ + L+Y+ FG+D Y
Sbjct: 8 CNLFAVFFAMFACFLN-IILLFSILYLKLIPIKSSMSLIYYKFGIDAFY 55
>Z81139-8|CAB03483.2| 361|Caenorhabditis elegans Hypothetical
protein W05H5.7 protein.
Length = 361
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -3
Query: 173 VVLLVFRHVSSFGSLF*FNFYFILCDAIYHDSI-VEYIIIFCIWLG 39
++ LVF ++S F L + Y +L I+H ++ + YI +FC+W G
Sbjct: 34 IIELVF-YISCF-HLMTISLYVMLKVQIFHRNLYILYIPMFCVWYG 77
>Z81062-15|CAB02950.2| 361|Caenorhabditis elegans Hypothetical
protein W05H5.7 protein.
Length = 361
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -3
Query: 173 VVLLVFRHVSSFGSLF*FNFYFILCDAIYHDSI-VEYIIIFCIWLG 39
++ LVF ++S F L + Y +L I+H ++ + YI +FC+W G
Sbjct: 34 IIELVF-YISCF-HLMTISLYVMLKVQIFHRNLYILYIPMFCVWYG 77
>Z81041-6|CAB02788.1| 336|Caenorhabditis elegans Hypothetical
protein C27A7.7 protein.
Length = 336
Score = 28.7 bits (61), Expect = 4.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 68 YIIIFCIWLGWFVRVRLQ 15
+ I FCIW+GW ++ +L+
Sbjct: 211 FTICFCIWIGWTIQSKLK 228
>Z81029-2|CAB02696.1| 220|Caenorhabditis elegans Hypothetical
protein C01A2.2 protein.
Length = 220
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Frame = -1
Query: 220 NSFIEY----DLFALRPVHMSCS--LYFGMFRVLAVYFDSIFILFYVMLFIMIPL*NILL 59
N FI++ DL V + C L++G+ + V+F S F++FY+ FI+ + IL
Sbjct: 93 NPFIDHLEIIDLIFAFLVGLPCHILLFYGLQKSKKVFF-SPFLVFYMTNFILNCIFTILT 151
Query: 58 YFAFGLD 38
AF +D
Sbjct: 152 LGAFAMD 158
>U53339-7|AAA96203.1| 345|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 13 protein.
Length = 345
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -1
Query: 214 FIEYDLFALRPVHMSCSLYFGMFRVLAVYFDSIFILFYVMLFIMIPL*NILLYFAFG 44
F ++ F++ + +YF R+ +YF + FI I L ++L FAFG
Sbjct: 23 FSQFYTFSVSSFAVPGLIYFMFKRLFQLYFHGNLKTLLIAYFISILLYAVMLCFAFG 79
>AC199166-1|ABO33245.1| 343|Caenorhabditis elegans F-box a protein
protein 6 protein.
Length = 343
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 369 INF-KTTTFRSKTGYTIRSDKRNSIL-RVIDKI*PVEIYTRSTLCKQLHTAVI 217
INF + F+ T+ SD IL +V++K+ PV+ T +CK L AV+
Sbjct: 26 INFVRYMNFQDHISPTL-SDMPTEILGQVLEKLKPVDQLTHLKICKSLRAAVV 77
>AC006675-2|AAK84549.1| 333|Caenorhabditis elegans Serpentine
receptor, class h protein34 protein.
Length = 333
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +3
Query: 207 SIKELLQYAVA----YTAYCVCRSLPVIFYLLLGVYYFVCQTVWC 329
+IK + +++A +T YCV P F L + YF C V C
Sbjct: 17 TIKRVFAFSIAIIFPFTHYCVLTKSPKSFGFLKWIIYFHCCCVTC 61
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 445 LRNAGKACFMLQKKKVLCIEIEINDYKFQNN 353
LRN G CFM ++L IE+ +Y +N+
Sbjct: 425 LRNIGNTCFMNAVLQMLVNNIELREYFLRNH 455
>Z32679-9|CAA83593.3| 337|Caenorhabditis elegans Hypothetical
protein C05B5.5 protein.
Length = 337
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -2
Query: 294 RVIDKI*PVEIYTRSTLCKQLHTAVILLSNTTYSPSDLCICR-APCISACFEFWQFILIQ 118
++ + + P EI+ S + K +H V +L N ++ D+ +C + F+F I++
Sbjct: 25 KIFEYLNPWEIFKLSRISKAIH--VTILKNKKFAVKDIDLCTDENILKFQFQFVNNIVLS 82
Query: 117 FLFY 106
+ FY
Sbjct: 83 WEFY 86
>AC199172-5|ABO33273.1| 305|Caenorhabditis elegans F-box a protein
protein 30 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 294 RVIDKI*PVEIYTRSTLCKQLHTAV 220
+V++K+ PVEI T +C+ L TA+
Sbjct: 18 QVLEKLGPVEILTCRKVCRNLRTAI 42
>AC199172-2|ABO33275.1| 305|Caenorhabditis elegans F-box a protein
protein 32 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 294 RVIDKI*PVEIYTRSTLCKQLHTAV 220
+V++K+ PVEI T +C+ L TA+
Sbjct: 18 QVLEKLGPVEILTCRKVCRSLRTAI 42
>Z83128-4|CAB05639.1| 348|Caenorhabditis elegans Hypothetical
protein W01D2.5 protein.
Length = 348
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 205 YDLFALRPVHMSCSLYFGMFRVLAVYFDSIFILFYVM-LFIMIPL 74
Y L A+ PV SCS AV I +L+Y+M LF+++ L
Sbjct: 86 YWLIAVFPVACSCSFIAMCVPRTAVILTCIGVLYYLMCLFVIVSL 130
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 205 YDLFALRPVHMSCSLYFGMFRVLAVYFDSIFILFYVMLFIMIPL*NI 65
Y L +LR S + MF +++Y S+ F++ + I +PL N+
Sbjct: 679 YYLNSLRQPMSPTSFGYFMFITISIYVLSLVCAFFIAISIEVPLLNL 725
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 110 FILCDAIYHDSIVEYIIIFCIWLGWFV 30
F++ DA ++ + FC +LGWF+
Sbjct: 440 FVMADAGASITVTSFTNFFCFFLGWFM 466
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,074
Number of Sequences: 27780
Number of extensions: 290770
Number of successful extensions: 737
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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