Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30h04
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 29 0.87
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 28 1.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 1.5
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 27 2.6
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 27 3.5
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 27 3.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 4.6
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 6.1
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.1
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 8.1
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 8.1
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 8.1
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 8.1
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 28.7 bits (61), Expect = 0.87
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 461 EADKESVATAVMRDLKMTQCSLVNFDSKSTIPKIDKCTTRSVDNIVLDKEYVPHTEEPLR 640
+AD +++A A ++ +KM Q S+ D S I K K VDN+ D E EP
Sbjct: 182 DADSKTLAKAWLQQIKMNQTSI---DPMSNISKSLK--ELEVDNVESDLEDSSFIAEPDS 236
Query: 641 AVP 649
++P
Sbjct: 237 SIP 239
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -3
Query: 495 ITAVATDSLSASI---NSSPFVVSAVPAQASVLVRKDLFFLIVSSSCVASGRIPMTLAS 328
+T VA+ S++AS+ +SS V SA A AS V ++ SSS VAS AS
Sbjct: 93 VTPVASSSVAASVTPVSSSAVVDSATSAAASSSVIPTSSSVVASSSEVASSTTSSAAAS 151
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 239 DNLHKKWVPKKKHEVLKAKYKCLK 310
D+ HK W+ + H++LKA + LK
Sbjct: 1183 DSHHKLWIQDRLHDILKALFFILK 1206
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 674 VSVALESNKAQHAVALLYAEHILYLERYYRRSESCIYRFWE 552
++V + + + + E + +LE+YYR S S R WE
Sbjct: 64 ITVIVPAYNESKRIGNMLQETVDHLEKYYRSSSSAGQRRWE 104
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 248 HKKWVPKKKHEVLKAKYKCLKKLFQIYDASVIGILPEATQEEETI 382
+KK +PK +++ K Y L K + A ++ +LP+ T ETI
Sbjct: 153 YKKRLPKDENQDFKIHYLSLLKSLLVSYAGIVVMLPD-TFNSETI 196
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = +2
Query: 323 IYDASVIGILPEATQEEETIRKKRSFRTKTDACAGTAETTNGDELIEADKESVATAVMRD 502
I+D + + + P+ E E +R+ R+ + C + I D ES+ + +D
Sbjct: 205 IFDRNGVTVCPDCKTENE-VRRIAGKRSVIEGCLRPRIVLYNE--IHPDSESIGSVCSQD 261
Query: 503 LKMTQCSLVNFDSKSTIPKIDK 568
LK L+ + IP + +
Sbjct: 262 LKSRPDCLIVAGTSCKIPGVKR 283
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +2
Query: 530 NFDSKSTIPKIDKC----TTRSVDNIVLDKEYVPHTEEPLRAVPYLIQEPRK 673
N KST+ C T S+D +LD+EY+P+ + AV + ++ RK
Sbjct: 310 NGSGKSTLLHAIACGLIPTPSSLDFYLLDREYIPNELTCVEAVLDINEQERK 361
>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 109
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 293 WLLKLHVFFSVPIFCANYRLRSLDPQEYW 207
WLL +FF + ++ N+R+ S+ +EY+
Sbjct: 82 WLLNFILFFRIHLYSCNFRM-SIICEEYY 109
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 70 VIGRYDIISKFRNNR*LAILFRCQNCLFIKRI 165
V G YDI +KF+N+ I++ N L++ +
Sbjct: 709 VSGIYDIPNKFQNSESRIIVYYSNNTLYLSEL 740
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 390 FFLIVSSSCVASGRIPMTLAS*IW--NSFFKHLYLAFKTSCFF 268
F + SC + P+ L I+ N +FK L LA K SC +
Sbjct: 323 FLFDYARSCQNTISYPIALQCLIYCSNPYFKRLELALKVSCAY 365
>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 43
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Frame = -2
Query: 511 HF*ISHHCCGHRF---LVCL 461
H SHHCC + F LVCL
Sbjct: 18 HIHFSHHCCENHFINPLVCL 37
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/91 (18%), Positives = 43/91 (47%)
Frame = +2
Query: 431 AETTNGDELIEADKESVATAVMRDLKMTQCSLVNFDSKSTIPKIDKCTTRSVDNIVLDKE 610
+ETT + + + + + + + + + ++ +++ C T SV++ +L
Sbjct: 233 SETTESVFMRTSGRNQIQLWKLENKTNFKSEFILYHDWGSVLQLEWCPTISVEDSILGFL 292
Query: 611 YVPHTEEPLRAVPYLIQEPRKPTRFQCFVQR 703
V ++ LR +++ PR P +F FV++
Sbjct: 293 AVVCSDGKLR----VLRVPRSPVKFHVFVEQ 319
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 571 AFIDFGNSRFTIEIDQRALGHF*ISHHCC 485
A +DFG+S +++ I + + G F I C
Sbjct: 202 AIVDFGHSNYSVSIVEFSRGQFHIKSTVC 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,042
Number of Sequences: 5004
Number of extensions: 59247
Number of successful extensions: 192
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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