Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30h04
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0611 - 8029101-8029205,8029985-8030107,8030191-8030556,803... 32 0.39
07_01_1045 + 9131301-9131483,9131652-9131717,9132433-9132513,913... 29 2.8
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140... 29 2.8
03_02_0243 - 6744164-6744415,6744518-6745135 29 2.8
08_02_0469 - 17531189-17531678,17531773-17531798,17533511-17533669 29 4.8
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642... 29 4.8
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 28 6.4
08_02_0642 + 19641263-19641990,19642077-19642484,19642585-19642636 28 8.4
04_04_0937 - 29515561-29515758,29515914-29516301,29516925-295170... 28 8.4
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 8.4
>04_01_0611 -
8029101-8029205,8029985-8030107,8030191-8030556,
8030639-8031124
Length = 359
Score = 32.3 bits (70), Expect = 0.39
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +2
Query: 188 KRKAALTSIPEDQENEDDNLHKKWVPKKKHEVLKAKYKCLKKLFQIYDASVIGILPEATQ 367
+RKA + + EDQE E+D ++ VP +K + K KK ++ D G
Sbjct: 160 RRKAKI--VEEDQEEEEDVKNEVAVPSRKKDFTMVKEDQEKKGKRVVDLPARGEDGAMVA 217
Query: 368 EEETIRK-KRSFRTKTDACAGTAETTNGDELIEADKE 475
EE+ +K ++ F + G +TT L + KE
Sbjct: 218 EEDRKKKLRKEFNFHSFHSKGKDDTTPVKNLKDKKKE 254
>07_01_1045 +
9131301-9131483,9131652-9131717,9132433-9132513,
9133414-9133482,9133581-9133643,9133933-9133941,
9134259-9134341,9134415-9134517
Length = 218
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 49 LRKITNSVIGRYDIISKFRNNR*LAILFRCQNCLFIKRIQSEIDAL 186
L ++ + G+ + F N L ++F C +C F+K ++ +I L
Sbjct: 59 LLQLPEPLTGKLWTLDDFEGNPALLVMFVCNHCPFVKHLKKDIAKL 104
>03_05_0599 -
26012956-26013316,26013444-26013736,26013813-26014040,
26014666-26014897,26015392-26015475,26015562-26015623,
26016263-26016367,26016458-26016481
Length = 462
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/77 (22%), Positives = 38/77 (49%)
Frame = +2
Query: 335 SVIGILPEATQEEETIRKKRSFRTKTDACAGTAETTNGDELIEADKESVATAVMRDLKMT 514
S++GIL Q E++ K+ ++++C+GT + + ++A + V A + D +
Sbjct: 332 SLVGILQSQVQREQS-STKQVCEERSESCSGTDNSPPLTKHVDASDDDVDKACVSDSRSV 390
Query: 515 QCSLVNFDSKSTIPKID 565
S N + + + +D
Sbjct: 391 LVSNDNTEVQLAVDGVD 407
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 194 KAALTSIPEDQENEDDNLHKKWVPKKKHEVLKAKYKCLKKLFQIYDASVIGILPEATQEE 373
KA + IPE E +D+ K+ +P K HE ++Y+C K DA G + EE
Sbjct: 179 KAFMEPIPEHGEPAEDS--KETLPPK-HETEVSEYRCYKPEQDAGDADYDGFYVKPAGEE 235
Query: 374 E 376
+
Sbjct: 236 D 236
>08_02_0469 - 17531189-17531678,17531773-17531798,17533511-17533669
Length = 224
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 245 LHKKWVPKKKHEVLK---AKYKCLKKLFQIYDASVIGILPEATQEEETIRKKRSFRTKT 412
L +W P K H K AK+K + + + I+D ++IG + E +I K ++ T
Sbjct: 25 LAMRWHPDKNHTGKKDAEAKFKDITEAYNIFDLNIIGRRMKTESEILSIEVKPGWKKGT 83
>02_02_0522 -
11161385-11161537,11162513-11162668,11164176-11164298,
11164404-11164466,11164512-11164577,11165128-11165232,
11165336-11165435,11165520-11165590,11166037-11166093,
11167215-11167292,11167367-11167441,11168490-11168540,
11169015-11169094,11169560-11169660,11169749-11169810,
11170084-11170590
Length = 615
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +2
Query: 392 RSFRTKTDACAGTAETTNGDELIEADKESVATAVMRDLKMTQCSLVNFDSKSTIPKIDKC 571
R F T + C G + G E K+ ++ AV K C L++ S + D C
Sbjct: 145 RRFPTPKEICRGLDKFVIGQERA---KKVLSVAVYNHYKRIHCELLSSRSAGDCSETDSC 201
Query: 572 TTRSVDNIVLDKEYV 616
+ D + L+K +
Sbjct: 202 AS-DTDGVELEKSNI 215
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +2
Query: 410 TDACAGTAETTNGDELIEADKESVATAVMRDLKMTQCSLVNFDSKSTIPKIDKCTTRSVD 589
+DA A T TTNG+E + S V++ + + ++ NF S ST ++ T +S
Sbjct: 558 SDAEAHT-NTTNGEETSVVNNSSEGYGVIKKSSVEETNVTNFSSAST--TVNDETLQSDS 614
Query: 590 NIVLDK 607
+ ++D+
Sbjct: 615 SEIVDR 620
>08_02_0642 + 19641263-19641990,19642077-19642484,19642585-19642636
Length = 395
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +2
Query: 260 VPKKKHEVLKAKYKCLKKLFQIYDASVIGILPEATQEEETIRKKRSFRTKTDACAGTAE 436
VP+K + A KC + +F + ++G+L E + + S T + A A+
Sbjct: 250 VPEKARTTVYALDKCFEAVFASFAPPIVGVLAEQVFGYKPVSSDASVETDRENAAALAK 308
>04_04_0937 -
29515561-29515758,29515914-29516301,29516925-29517091,
29517577-29517783
Length = 319
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Frame = +2
Query: 200 ALTSIPEDQENEDDNLHKK-WVP---KKKHEVLKAKYKCLKKLFQIYDASVIGILPEATQ 367
A S D+E N+++K VP K +HE L+ + + + + + +S + + +
Sbjct: 213 AAASTEVDEETAKQNVYQKDGVPSRVKAEHEALQTRLEASNNVNK-FSSSQRNM--QLSD 269
Query: 368 EEETIRKKRSFRTKTDACAGTAETTNGDELIEADKES 478
+ + S ++ ++ +GT + NG +E++K S
Sbjct: 270 RQLRLSSNESSGSRQNSLSGTVKNQNGQPTLESEKRS 306
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 27.9 bits (59), Expect = 8.4
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +2
Query: 224 QENEDDNLHKKWVPKKKHEVLKAKYKCLKKLFQIYDASVIGILPEATQEEETIRKKRSFR 403
++NE DNL ++ + ++K + K KK I S IG++P++T+E + S +
Sbjct: 572 KQNEGDNLVEECIYYGNSIMIKPE-KYRKKEKSII-GSTIGVVPDSTEENSRVGLLLSVK 629
Query: 404 TKTDACAGTAETTNGD-ELIEADKESVATAVMRDLKMTQCSLVN 532
D+ GT N + I+ S V K + S+ N
Sbjct: 630 PHLDS-TGTYHDLNSPLQKIDLLNVSNTNCVEEQTKGMEASISN 672
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,987,608
Number of Sequences: 37544
Number of extensions: 329618
Number of successful extensions: 971
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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