Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30h02
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical pr... 416 e-117
U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical pr... 416 e-117
U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical pr... 416 e-117
U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical pr... 416 e-117
Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical pr... 177 2e-53
U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL132877-11|CAB60853.1| 214|Caenorhabditis elegans Hypothetical... 30 1.5
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 29 2.7
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 29 2.7
AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical... 29 2.7
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 28 6.2
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 28 6.2
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 28 6.2
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 28 6.2
AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical ... 28 8.1
AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical ... 28 8.1
AL023835-2|CAA19487.2| 592|Caenorhabditis elegans Hypothetical ... 28 8.1
>U00036-8|AAL06052.1| 318|Caenorhabditis elegans Hypothetical
protein R151.2c protein.
Length = 318
Score = 416 bits (1025), Expect = e-117
Identities = 198/249 (79%), Positives = 224/249 (89%)
Frame = +1
Query: 1 VFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEIND 180
VFSGSSHPDL+ +I +RL +++ K KKFSN ET VEIGESVRGEDVYI+QS +GEIND
Sbjct: 5 VFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEIND 64
Query: 181 NLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSGADHII 360
NLMELLIMINACKIAS+ RV AVIP FPYARQDKKDKSRAPI+AKLVAN+LSV+GADHII
Sbjct: 65 NLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAGADHII 124
Query: 361 TMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRL 540
TMDLHASQIQGFFDIPVDNL+AEPA+LK+IKE+IP+W+TS++VSPDAGGAKRVTSIADRL
Sbjct: 125 TMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVTSIADRL 184
Query: 541 NVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVY 720
NV+FALIHKE K+ANEV M LVG V+ + AILVDDMADTCGTIC AA+KL+EAGA KVY
Sbjct: 185 NVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEAGADKVY 244
Query: 721 AILTHGIFS 747
A HGIFS
Sbjct: 245 AFCVHGIFS 253
>U00036-7|AAK29858.2| 319|Caenorhabditis elegans Hypothetical
protein R151.2b protein.
Length = 319
Score = 416 bits (1025), Expect = e-117
Identities = 198/249 (79%), Positives = 224/249 (89%)
Frame = +1
Query: 1 VFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEIND 180
VFSGSSHPDL+ +I +RL +++ K KKFSN ET VEIGESVRGEDVYI+QS +GEIND
Sbjct: 6 VFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEIND 65
Query: 181 NLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSGADHII 360
NLMELLIMINACKIAS+ RV AVIP FPYARQDKKDKSRAPI+AKLVAN+LSV+GADHII
Sbjct: 66 NLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAGADHII 125
Query: 361 TMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRL 540
TMDLHASQIQGFFDIPVDNL+AEPA+LK+IKE+IP+W+TS++VSPDAGGAKRVTSIADRL
Sbjct: 126 TMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVTSIADRL 185
Query: 541 NVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVY 720
NV+FALIHKE K+ANEV M LVG V+ + AILVDDMADTCGTIC AA+KL+EAGA KVY
Sbjct: 186 NVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEAGADKVY 245
Query: 721 AILTHGIFS 747
A HGIFS
Sbjct: 246 AFCVHGIFS 254
>U00036-6|AAK29853.1| 377|Caenorhabditis elegans Hypothetical
protein R151.2a protein.
Length = 377
Score = 416 bits (1025), Expect = e-117
Identities = 198/249 (79%), Positives = 224/249 (89%)
Frame = +1
Query: 1 VFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEIND 180
VFSGSSHPDL+ +I +RL +++ K KKFSN ET VEIGESVRGEDVYI+QS +GEIND
Sbjct: 64 VFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEIND 123
Query: 181 NLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSGADHII 360
NLMELLIMINACKIAS+ RV AVIP FPYARQDKKDKSRAPI+AKLVAN+LSV+GADHII
Sbjct: 124 NLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAGADHII 183
Query: 361 TMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRL 540
TMDLHASQIQGFFDIPVDNL+AEPA+LK+IKE+IP+W+TS++VSPDAGGAKRVTSIADRL
Sbjct: 184 TMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVTSIADRL 243
Query: 541 NVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVY 720
NV+FALIHKE K+ANEV M LVG V+ + AILVDDMADTCGTIC AA+KL+EAGA KVY
Sbjct: 244 NVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEAGADKVY 303
Query: 721 AILTHGIFS 747
A HGIFS
Sbjct: 304 AFCVHGIFS 312
>U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical
protein R151.2d protein.
Length = 446
Score = 416 bits (1025), Expect = e-117
Identities = 198/249 (79%), Positives = 224/249 (89%)
Frame = +1
Query: 1 VFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEIND 180
VFSGSSHPDL+ +I +RL +++ K KKFSN ET VEIGESVRGEDVYI+QS +GEIND
Sbjct: 133 VFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEIND 192
Query: 181 NLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSGADHII 360
NLMELLIMINACKIAS+ RV AVIP FPYARQDKKDKSRAPI+AKLVAN+LSV+GADHII
Sbjct: 193 NLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAGADHII 252
Query: 361 TMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRL 540
TMDLHASQIQGFFDIPVDNL+AEPA+LK+IKE+IP+W+TS++VSPDAGGAKRVTSIADRL
Sbjct: 253 TMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVTSIADRL 312
Query: 541 NVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVY 720
NV+FALIHKE K+ANEV M LVG V+ + AILVDDMADTCGTIC AA+KL+EAGA KVY
Sbjct: 313 NVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEAGADKVY 372
Query: 721 AILTHGIFS 747
A HGIFS
Sbjct: 373 AFCVHGIFS 381
>Z68014-5|CAA92027.1| 353|Caenorhabditis elegans Hypothetical
protein W04G3.5 protein.
Length = 353
Score = 177 bits (432), Expect(2) = 2e-53
Identities = 85/196 (43%), Positives = 133/196 (67%)
Frame = +1
Query: 1 VFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEIND 180
+ +G+SHP+LA+ + +RL I LG+ +N ET V+I +SVRG+ V+I+QSGS +N+
Sbjct: 13 LLTGNSHPELAKMVSERLEIRLGEATVYNKTNRETSVDIKQSVRGKHVFILQSGSKNVNN 72
Query: 181 NLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSGADHII 360
++MELL++I ACK + + +T ++P PY++Q + + R+ I KLVA ++ +GA ++
Sbjct: 73 DVMELLVLIYACKTSMSKTITVIMPYLPYSKQCRMLR-RSSIAMKLVAEMICKAGASRLV 131
Query: 361 TMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRL 540
++DL+ +IQGFF PVDNL A P L+ IK NIPD+K +I+V+ G + TS ADRL
Sbjct: 132 SLDLYKKEIQGFFSCPVDNLRASPFFLQHIKTNIPDYKNAIIVAKSPGVMNKATSYADRL 191
Query: 541 NVEFALIHKERKKANE 588
+ A+IH E+K E
Sbjct: 192 RLGVAVIHGEQKDEEE 207
Score = 50.0 bits (114), Expect(2) = 2e-53
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +1
Query: 574 KKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFS 747
+++ + + +VGDV R AI+VDD+ D + AAE L GA K+Y I THG+ S
Sbjct: 230 QESKQKPPLTVVGDVGGRIAIMVDDIIDDAQSFVAAAEVLKARGAYKIYVIATHGVLS 287
>U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical
protein T28D9.7 protein.
Length = 982
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/80 (30%), Positives = 33/80 (41%)
Frame = +1
Query: 508 AKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAE 687
++ +TS + N F L+ + N M VGD+K R VDD+A+ I E
Sbjct: 472 SRPITSEEKKANQMFFLLDETAFNRNATRYMS-VGDLKSRYGDKVDDVAEEIAVILRIME 530
Query: 688 KLIEAGATKVYAILTHGIFS 747
KL Y G FS
Sbjct: 531 KLWHVFMPDSYIRTMTGDFS 550
>AL132877-11|CAB60853.1| 214|Caenorhabditis elegans Hypothetical
protein Y105E8B.5 protein.
Length = 214
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +1
Query: 520 TSIADRLNVEFALI--HKERKKANEVASMVL--VGDVKDRTAILVDDMADTCGTICHAAE 687
+S + + V+F + ++++ ++ M L + ++K ++ ++VDD++DT T+
Sbjct: 84 SSCPEPMTVDFIRVKSYEDQMSTGQIQIMGLSNLDELKGKSVLVVDDISDTGRTLAKLLS 143
Query: 688 KLIEAGATKVYAIL 729
L E G K + L
Sbjct: 144 TLHETGVEKTWTAL 157
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = -1
Query: 671 IVPQVSAMSSTKMAVLSLTSPTSTI-EATSLAFFLSLWIKANST----FKRSAIDVTLLA 507
++ +VSA LS+T+P STI E S+ +SL ++ T F R D++
Sbjct: 482 VLAEVSAEPQRPPVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSRLKTDISF-- 539
Query: 506 PPASGDTTMLVFQSGMFSLIHFNTAGSAKRLSTGIS 399
P +TT +SG SL + SA+RLS G+S
Sbjct: 540 PSTVEETTP---RSGRVSL----DSESARRLSAGLS 568
>Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = -1
Query: 671 IVPQVSAMSSTKMAVLSLTSPTSTI-EATSLAFFLSLWIKANST----FKRSAIDVTLLA 507
++ +VSA LS+T+P STI E S+ +SL ++ T F R D++
Sbjct: 480 VLAEVSAEPQRPPVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSRLKTDISF-- 537
Query: 506 PPASGDTTMLVFQSGMFSLIHFNTAGSAKRLSTGIS 399
P +TT +SG SL + SA+RLS G+S
Sbjct: 538 PSTVEETTP---RSGRVSL----DSESARRLSAGLS 566
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 4/146 (2%)
Frame = -1
Query: 746 EKIP*VKIAYTLVAPASINFSAAWQIVPQVSAMSSTKMAVLSLTSPTSTIEATSLAFFLS 567
+ +P V Y P +I +S WQIV +SS + L T + ++ ++ +S
Sbjct: 3859 KSVPSVDEPYLFGLPENIKYS--WQIVEADRTISSIRTLALGDTKNALSDQSDKISQIVS 3916
Query: 566 LWIK---ANSTFKRSAIDVTLLAPPASGDTTMLVFQS-GMFSLIHFNTAGSAKRLSTGIS 399
LW K ++ KR A P S + + + +H + AK + T
Sbjct: 3917 LWKKLCQSDDLPKRELPTAIRSADPISEVLCLETINALSLIKQLHRSIGHVAKSMKTPSL 3976
Query: 398 KNP*ICDA*RSIVMM*SAPDTERMLA 321
+P + +S+V + + + M A
Sbjct: 3977 ASPAVQKTIQSLVFQQTPDEWDSMWA 4002
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/93 (23%), Positives = 39/93 (41%)
Frame = -1
Query: 686 SAAWQIVPQVSAMSSTKMAVLSLTSPTSTIEATSLAFFLSLWIKANSTFKRSAIDVTLLA 507
S W + ++ +ST+ + S + TST ++TS +S T + T +
Sbjct: 98 SPVWTNCTETTSTASTEFTISSTSLKTSTSDSTSTEPRISTTTDTKDTTTEDPVSSTDQS 157
Query: 506 PPASGDTTMLVFQSGMFSLIHFNTAGSAKRLST 408
+ +TT G S +T GS +R S+
Sbjct: 158 STSPHETTRDTTTEGTTSEDSTSTYGSTERSSS 190
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = -1
Query: 671 IVPQVSAMSSTKMAVLSLTSPTSTI-EATSLAFFLSLWIKANST----FKRSAIDVTLLA 507
++ +VSA LS+T+P STI E S+ +SL ++ T F R D++
Sbjct: 482 VLAEVSAEPQRPPVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSRLKTDISF-- 539
Query: 506 PPASGDTTMLVFQSGMFSLIHFNTAGSAKRLSTGIS 399
P +TT +SG SL + SA+RLS G+S
Sbjct: 540 PSTVEETTP---RSGRVSL----DSESARRLSAGLS 568
>AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = -1
Query: 671 IVPQVSAMSSTKMAVLSLTSPTSTI-EATSLAFFLSLWIKANST----FKRSAIDVTLLA 507
++ +VSA LS+T+P STI E S+ +SL ++ T F R D++
Sbjct: 480 VLAEVSAEPQRPPVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSRLKTDISF-- 537
Query: 506 PPASGDTTMLVFQSGMFSLIHFNTAGSAKRLSTGIS 399
P +TT +SG SL + SA+RLS G+S
Sbjct: 538 PSTVEETTP---RSGRVSL----DSESARRLSAGLS 566
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 528 NRCHPFSTTSIRGHNN-ACFPV 466
N HPFSTTSI NN A +P+
Sbjct: 200 NMTHPFSTTSIASSNNLARYPI 221
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 528 NRCHPFSTTSIRGHNN-ACFPV 466
N HPFSTTSI NN A +P+
Sbjct: 238 NMTHPFSTTSIASSNNLARYPI 259
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 528 NRCHPFSTTSIRGHNN-ACFPV 466
N HPFSTTSI NN A +P+
Sbjct: 238 NMTHPFSTTSIASSNNLARYPI 259
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 528 NRCHPFSTTSIRGHNN-ACFPV 466
N HPFSTTSI NN A +P+
Sbjct: 200 NMTHPFSTTSIASSNNLARYPI 221
>AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical
protein Y37A1B.2d protein.
Length = 564
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 565 KERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAI 726
++ K+ + S ++ +V+ +TA V+DM T GT + ATK+ ++
Sbjct: 506 EKMKQRIDAMSYTVIAEVQHQTAEKVEDMKSTMGTYLKKQAMFYQEVATKLTSL 559
>AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical
protein Y37A1B.2c protein.
Length = 566
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 565 KERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAI 726
++ K+ + S ++ +V+ +TA V+DM T GT + ATK+ ++
Sbjct: 508 EKMKQRIDAMSYTVIAEVQHQTAEKVEDMKSTMGTYLKKQAMFYQEVATKLTSL 561
>AL023835-2|CAA19487.2| 592|Caenorhabditis elegans Hypothetical
protein Y37A1B.2b protein.
Length = 592
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 565 KERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAI 726
++ K+ + S ++ +V+ +TA V+DM T GT + ATK+ ++
Sbjct: 534 EKMKQRIDAMSYTVIAEVQHQTAEKVEDMKSTMGTYLKKQAMFYQEVATKLTSL 587
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,660,191
Number of Sequences: 27780
Number of extensions: 385562
Number of successful extensions: 1168
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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