Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30g22
         (185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   1.00 
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    24   3.0  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    23   5.3  
SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        23   5.3  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    23   7.0  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    23   7.0  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      22   9.3  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    22   9.3  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    22   9.3  

>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 19  VLYFILFFTYLYKKWPSQW 75
           VL  ILF+  L+KKWP +W
Sbjct: 652 VLGTILFWA-LWKKWPQKW 669


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 21  IVFYTFFYIFIQKMAFTMELETNPEITKT*GIFDRVIKS 137
           I++  + Y  I++M+F+    T+PE+ K  G    VI S
Sbjct: 16  ILYEEYKYHEIKEMSFSSCARTSPELLKKFGCDAHVITS 54


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 16  HVLYFILFFTYLYKKWP 66
           H+ YF+ F     ++WP
Sbjct: 424 HIFYFLFFHVATIQQWP 440


>SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 28 FILFFTYLYKKWPS 69
          FIL FT+++K +PS
Sbjct: 57 FILVFTFIFKGFPS 70


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 145 KIIICVITGGRT 180
           K+++C+I+ GRT
Sbjct: 234 KVVVCIISDGRT 245


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 145 CGFDFITRSNIPYVLVISGF 86
           CGFD +  S   YV+ ++G+
Sbjct: 318 CGFDLLRVSGQSYVIDVNGW 337


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 39  FYIFIQKMAFTMELETNPEITKT 107
           F++F  + A   EL+T+P ++ T
Sbjct: 83  FFVFATENAVPRELQTSPIVSPT 105


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 1   GHLQTHVLYFILFFTYLYKKWPSQ 72
           G + T V+ FIL   +L ++W  Q
Sbjct: 164 GQVLTFVVTFILITAFLVREWVLQ 187


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 8   YKHMYCILYFFLHIYTKNGLHN 73
           Y H++C+L  +L I+    L N
Sbjct: 165 YGHLHCVLDHYLIIFCGQDLSN 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,159
Number of Sequences: 5004
Number of extensions: 12283
Number of successful extensions: 30
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)