Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30g13
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 30 0.30
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 29 0.52
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 1.6
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.1
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 4.8
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 6.4
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 8.4
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 8.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 8.4
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 8.4
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 30.3 bits (65), Expect = 0.30
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 352 CNSSEVQLSSKVSQNFNGIGRDFAEENKPVIKVTVIPKHDRQRPNKQRLKSKTIKNT 522
CN+S+ +S+V+ N G + + + I VT IP+ R P+ Q S I+ T
Sbjct: 81 CNNSDQSWTSRVTSKKNEAGTESGDASVRRIYVTSIPEEHRHLPS-QWFPSNKIRTT 136
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 29.5 bits (63), Expect = 0.52
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 580 NNSKEKIYNVKTTESADFSSEYSKKHHDIEEISIKELSN 696
NN+ E T+E+ S +K+H+ E +S K LSN
Sbjct: 208 NNNNEDRVEAVTSENKSIDSAPQEKNHEYEIVSPKSLSN 246
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.9 bits (59), Expect = 1.6
Identities = 31/124 (25%), Positives = 53/124 (42%)
Frame = +1
Query: 358 SSEVQLSSKVSQNFNGIGRDFAEENKPVIKVTVIPKHDRQRPNKQRLKSKTIKNTSSDHE 537
S E+ + S+ S+NFNG+ F +P+I D Q Q K I N ++
Sbjct: 318 SHEINVLSQQSKNFNGV---FESSYQPLIN-----DLDHQISVMQN-DEKRINNAKTELS 368
Query: 538 YSVHANNLYFIVTGNNSKEKIYNVKTTESADFSSEYSKKHHDIEEISIKELSNITSLLKS 717
S+ + KEK+Y K E A+ + +K + ++ +E +N L+
Sbjct: 369 LSLEKK-----LEAKKQKEKVYKDKLDELANLETMVLEKK---KAVATREAANKIRLVDL 420
Query: 718 LDME 729
D+E
Sbjct: 421 NDLE 424
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 616 TESADFSSEYSKKHHDIEEI--SIKELSNITSLLKS 717
T S DF EYS +HD+ + S+ + N TS L S
Sbjct: 316 TLSLDFKQEYSGNNHDMSGLSSSLSKSHNSTSALSS 351
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 535 EYSVHANNLYFIVTGNNSKEKIYNVKTT 618
E S+ N+ ++V +KE++YN KT+
Sbjct: 738 ETSITIPNIRYVVDCGKAKERVYNEKTS 765
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 368 SNCQAKYRKTSMVLGGISQKKTSPLLKLL*YPN 466
+N + +KT + L GI+ K+ S L +L YPN
Sbjct: 883 ANLRDYVKKTKINLNGINYKRQSGLRELNTYPN 915
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 652 FLNIQKKNPRSLLFSRCRFFLYCYFRL 572
F N + PR + + C FFL +FR+
Sbjct: 622 FDNFSESRPRLNILNNCSFFLPFHFRI 648
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 664 IEEISIKELSNITSLLKSLDMEK 732
+E +S K LSN+ LK LD+ K
Sbjct: 780 LESLSAKSLSNLLVELKQLDLSK 802
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -1
Query: 438 GLVFFCEIPPNT 403
GLV CEIPPNT
Sbjct: 228 GLVSTCEIPPNT 239
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 281 TSSFEGLMKSWGKLFCSLGILLIG 210
TS ++G +K W L CSL ++G
Sbjct: 410 TSGYDGCVKLWNPLNCSLIKSMVG 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,839
Number of Sequences: 5004
Number of extensions: 56505
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -