Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30g10
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182...    31   1.2  
04_01_0279 + 3743025-3745169                                           30   2.2  
09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830...    29   5.0  
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122...    29   5.0  
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572...    28   8.7  

>06_03_1052 -
           27217792-27217846,27218025-27218114,27218191-27218274,
           27218526-27218668,27218748-27218845,27218959-27219019,
           27219184-27219330,27219428-27219527,27219701-27219813,
           27220302-27220402,27220614-27220652,27220739-27220797,
           27221027-27221088,27221411-27221506
          Length = 415

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = +3

Query: 447 SSPVTLSASVAQACIPVQWAEVPDNSSVIHVGWGRTNVNVAQASSVLNEVEVRIVNR--- 617
           SS   + A+  QA +    +   + + V   G+GR    V + ++  +++EV  VN    
Sbjct: 55  SSVEPVRATATQAPLATHQSSSTEKTKVGINGFGRIGRLVLRIATNRDDIEVVAVNDPFI 114

Query: 618 DVCRTRYEFLESVTGDPFPVTVNMICAGLLDIGGK 722
           D     Y F    T  PF  T+ ++    L+I GK
Sbjct: 115 DAKYMAYMFKYDSTHGPFKGTIKVVDESTLEINGK 149


>04_01_0279 + 3743025-3745169
          Length = 714

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 311 TSHVAVSVYKAVS---RAQHVPLGDQRASARQLT 219
           T HVA  +Y AVS   R+     GD+ A+ARQLT
Sbjct: 477 TWHVATDIYLAVSGGDRSSPANAGDRAAAARQLT 510


>09_04_0232 -
           15882589-15882720,15882799-15882889,15882987-15883087,
           15883494-15883592,15883693-15883830,15883918-15884508,
           15884819-15884989,15885068-15885203,15885561-15885592,
           15886280-15886336,15886434-15886686,15886762-15886850,
           15887181-15887234,15887498-15887689,15887777-15887938
          Length = 765

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 203 NCVGISFDCGRRAPNNASIRSGAQRKR 123
           NCV ++  CG+ A   A  RSG + KR
Sbjct: 11  NCVLLAVLCGKHAEKRAQARSGLEAKR 37


>01_05_0647 +
           23910318-23910694,23911732-23911867,23912067-23912277,
           23912357-23912724,23913793-23914081,23914173-23914372,
           23914452-23914646
          Length = 591

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 546 PNPRE*PRNYQVLPPTAPVYKLAPRSRSGSQ 454
           P P   P N+   PPT P Y L P ++   Q
Sbjct: 63  PEPEPTPVNHHYPPPTTPAYSLPPPAQPYGQ 93


>03_02_0120 -
           5728572-5728712,5728812-5728916,5729178-5729441,
           5729809-5729958,5730070-5730150,5730481-5730597,
           5730679-5730831,5731426-5731569,5731773-5731802,
           5732070-5732430,5732682-5732849,5733371-5733600,
           5734088-5734194,5734275-5734623
          Length = 799

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 431 DIVVSDRDVVPLVDDDHRHGVNTSPRV*N-----TASGANAEQCGTSHVAVSVYKA 279
           D+++SDRD +  + D  +  V T P   N       S A+ +Q G ++   + Y A
Sbjct: 668 DVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWPATSEASGQQWGAAYAPQATYPA 723


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,614,397
Number of Sequences: 37544
Number of extensions: 474335
Number of successful extensions: 1228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)