Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30g10
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    86   3e-17
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    50   2e-06
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    38   0.007
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    36   0.030
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    35   0.052
U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    31   1.1  
Z81146-6|CAM06584.1|  151|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical...    29   3.4  
Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    28   7.9  
U29536-3|AAA68795.2|  179|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 2/187 (1%)
 Frame = +3

Query: 147 DTRIIGGSPTTIERYPYTVQVLYN-GQLSCGGSLITKRHVLSAGHCFIDTNGNVASPTLF 323
           D R+IGGS ++   +P+TVQ+L   G   CGGSLI    VL+A HCF         PT +
Sbjct: 55  DHRLIGGSESSPHSWPWTVQLLSRLGHHRCGGSLIDPNFVLTAAHCFAKDR----RPTSY 110

Query: 324 SIRSGSSVLYSGGSIHSVSMIIVHERYNVPIRDN-DIAVLVLSSPVTLSASVAQACIPVQ 500
           S+R G       GS H V+ + +H  YN+    + D A++ +  PV  S +    C+P  
Sbjct: 111 SVRVGGH-RSGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPS- 168

Query: 501 WAEVPDNSSVIHVGWGRTNVNVAQASSVLNEVEVRIVNRDVCRTRYEFLESVTGDPFPVT 680
                +N   +  GWG T    + ++  L E+ V +++   C +   ++  +     P  
Sbjct: 169 -LPAVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRI---HLP-- 222

Query: 681 VNMICAG 701
            +M+CAG
Sbjct: 223 -SMLCAG 228


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 4/196 (2%)
 Frame = +3

Query: 153 RIIGGSPTTIERYPYTVQVLYNGQLS--CGGSLITKRHVLSAGHCFIDTNGNVASPTLFS 326
           R++GG  T    +P+T  +      +  CG S++ K H+++A HCF + +  V+S  +  
Sbjct: 26  RVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHCF-EEDERVSSYEVVV 84

Query: 327 IRSGSSVLYSGGSIHSVSMIIVHERYNVPIRDNDIAVLVLSSP-VTLSASVAQACIPVQ- 500
               ++       I  +  I  +  Y   I  +DIA+L +  P +  +      C+P + 
Sbjct: 85  GDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPSKD 143

Query: 501 WAEVPDNSSVIHVGWGRTNVNVAQASSVLNEVEVRIVNRDVCRTRYEFLESVTGDPFPVT 680
           +   P    V+  GWG   +  A+    L    + I+NR  C    +   S++   F   
Sbjct: 144 FVYTPGRQCVVS-GWGSMGLRYAER---LQAALIPIINRFDCVNSSQIYSSMSRSAF--- 196

Query: 681 VNMICAGLLDIGGKDA 728
               CAG L+ GG D+
Sbjct: 197 ----CAGYLE-GGIDS 207


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
 Frame = +3

Query: 165 GSPTTIERYPYTVQVLYNG-----QLSCGGSLITKRHVLSAGHCF 284
           G+PT +   P+ VQ+         ++ CGG+LIT +HVL+A HCF
Sbjct: 37  GNPTHLA--PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCF 79


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 180 IERYPYTVQVLYNGQLSCGGSLITKRHVLSAGHCFIDTNGN 302
           I+ +P+ V    +G    GGS+I+  H+++A H FI T G+
Sbjct: 25  IKNFPWAVSFTVDGVNRLGGSIISPYHIITAAHGFITTIGS 65


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 19/163 (11%)
 Frame = +3

Query: 231 CGGSLITKRHVLSAGHCFI--DTNGNVASPTLFSIRSGSSVLYSGGS--IHSVSMIIVHE 398
           CGG LI    V+++ HC    D     A  TL  +       +  G     S +M I  +
Sbjct: 46  CGGVLIAPSIVITSAHCVFSGDDFAVTAKVTLGDVHLNK---HDDGEQEFRSHAMAISKK 102

Query: 399 RYNVPIRDND-IAVLVLS-------SPVTLSASVAQACIPVQWAEVPD------NSSVIH 536
            +N     ND +AV+ L        SP++L  +   +   V + E          +SV +
Sbjct: 103 FFNDASEANDDVAVIFLPQRADVCHSPLSLQIAKLPSTGSVNFKETAPLTQLQLETSVCY 162

Query: 537 V-GWGRTNVNVAQASSVLNEVEVRIVNRDVCRTRYEFLESVTG 662
           V GWG+T    A+ S  + ++ V +  R + + +Y   ++VTG
Sbjct: 163 VAGWGKTENKTAKYSDSVRQMMVNLSVRRIGKRKYLIAKAVTG 205


>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +3

Query: 171 PTTIERYPYTVQVLYNGQL-----SCGGSLITKRHVLSAGHCFIDTNGNVASPTLFSIRS 335
           P   ER+ Y V+VL          +C G+L++   VL++  CF DT  N+ +  +   + 
Sbjct: 22  PAKWERHQYLVKVLTKDTKLKNISTCTGTLLSPSVVLTSSKCFPDTRKNLIAQAIIKKKD 81

Query: 336 GSSVL 350
            S+ +
Sbjct: 82  SSATM 86


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 228 SCGGSLITKRHVLSAGHCFIDTN 296
           +C G++++ RH+L A HCF   N
Sbjct: 192 TCTGTIVSPRHILIATHCFAGQN 214


>Z81146-6|CAM06584.1|  151|Caenorhabditis elegans Hypothetical
           protein K10D11.7 protein.
          Length = 151

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 358 PEYRTLLPERMLNNVGLATLPLVSIKQCPALSTCLLVISEP 236
           PE++T+ P+  +N   + T P  +  Q P  S C  +++ P
Sbjct: 26  PEHQTITPKFPINTDAIYTFPSKAFTQFPVNSACTWLVNIP 66


>AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical
           protein Y66D12A.15 protein.
          Length = 789

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 363 SIHSVSMIIVHERYNVPIRDNDIAVLVLSSPVTLSASVAQACIPVQWAEVPDNSSV 530
           S   V +++ H RY V  R +D+   +L   V  S  +     P Q  E+P    +
Sbjct: 162 SYGKVKLVLKHNRYFVESRHSDVMQKLLKDSVIQSCILDDRVQPAQQTELPAQEKI 217


>Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical
           protein C05G5.4 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 335 GANAEQCGTSHVAVSVYKAVSRAQH 261
           G NA + GT H+ + V+K VS A++
Sbjct: 63  GVNANKAGTEHLGLPVFKNVSEARN 87


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 423 NDIAVLVLSSPVTLSASVAQACIP 494
           NDIAV  L  P+  S  +  AC+P
Sbjct: 121 NDIAVFELEEPIEFSKDIFPACLP 144


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 231 CGGSLITKRHVLSAGHC 281
           C G+L + RH+L+A HC
Sbjct: 75  CSGTLTSPRHILTATHC 91


>U29536-3|AAA68795.2|  179|Caenorhabditis elegans Hypothetical
           protein F45E12.5b protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 347 NTASGANAEQCGTSHVAVSVYKAVSRAQHVP---LGDQ 243
           N+A G  A+  G     + VYK   RA+H+P   LGD+
Sbjct: 64  NSALGKEADTTGKLPYCIHVYKQGRRAKHMPHAELGDK 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,635
Number of Sequences: 27780
Number of extensions: 366201
Number of successful extensions: 1012
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)