Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30g06
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical ...    66   3e-11
Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical pr...    33   0.24 
U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast...    33   0.24 
U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    33   0.24 
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    32   0.42 
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    32   0.42 
U88181-1|AAB42305.1|  149|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U58727-1|AAB00581.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z92796-6|CAB63232.1|  405|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical
           protein Y94H6A.7 protein.
          Length = 211

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
 Frame = +1

Query: 328 LDTLKKHNVPYNNHARQITS-EDFDYYDYIFGMDESNMKDLN---KKAPKGS-KAKLLLF 492
           +  LKK+ +    H  ++TS +DF  +DYIFGMD+ N++DL    +K PK   KA++L+ 
Sbjct: 1   MGALKKYGIKDYQHRARVTSPDDFRKFDYIFGMDDQNIEDLQEIARKVPKTERKAEILML 60

Query: 493 GDFDPQ-GDRIIRDPYYDSDSKGFEK 567
           G  D   G R + DPYY+S SK F++
Sbjct: 61  GVQDVMAGKREVPDPYYESGSKQFDE 86


>Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical
           protein R08D7.3 protein.
          Length = 570

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 301 VGNPPDWRALDTL-KKHNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAP 462
           +G   DW  +D   ++ N  YN       +     +DYI GMDE N + ++   P
Sbjct: 42  IGRVADWIGVDRFYRRGNERYNERVYGSAANAGSQFDYIHGMDEHNFQLVDTSKP 96


>U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform b protein.
          Length = 615

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 214 AEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRAL-DTLKKHNVPYNNHARQITSE 390
           AEA    T +DM+LG+H + +   I   +   PP    L   L K   P +N  R+   +
Sbjct: 38  AEAEISFTKDDMHLGKHTEYEKRLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLED 97

Query: 391 DFDYYD 408
           D D  D
Sbjct: 98  DSDTVD 103


>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 214 AEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRAL-DTLKKHNVPYNNHARQITSE 390
           AEA    T +DM+LG+H + +   I   +   PP    L   L K   P +N  R+   +
Sbjct: 219 AEAEISFTKDDMHLGKHTEYEKRLIESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLED 278

Query: 391 DFDYYD 408
           D D  D
Sbjct: 279 DSDTVD 284


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
            protein.
          Length = 1908

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 316  DWRALDTLKKHNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAP 462
            +W+ L+TL  +NVP NN    +TS+    Y+     D S    ++ K P
Sbjct: 1604 NWKRLNTLAHYNVP-NNAILTLTSKSNSLYNLSILSDRSEKSSVSMKTP 1651


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
          Length = 1951

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 316  DWRALDTLKKHNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAP 462
            +W+ L+TL  +NVP NN    +TS+    Y+     D S    ++ K P
Sbjct: 1610 NWKRLNTLAHYNVP-NNAILTLTSKSNSLYNLSILSDRSEKSSVSMKTP 1657


>U88181-1|AAB42305.1|  149|Caenorhabditis elegans Hypothetical
           protein C55B6.4 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/77 (20%), Positives = 39/77 (50%)
 Frame = +1

Query: 169 KALFICLGNICRSPIAEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRALDTLKKH 348
           + L ICL     S ++  ++ + + D +    + + +  + G+ V  P +W+  + ++KH
Sbjct: 70  ETLEICLQPSTNSTVSNVLY-RPITDPSDDRIFVVTNKNVDGY-VKPPKNWKFEEEIRKH 127

Query: 349 NVPYNNHARQITSEDFD 399
           N   +   R++T+ D +
Sbjct: 128 NEKDSKKLRKLTTADLE 144


>U58727-1|AAB00581.1|  358|Caenorhabditis elegans Hypothetical
           protein D1005.3 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 313 PDWRALDTLK--KHNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAPKGSKAKLL 486
           PD+ A  T +  K  VPY+++ ++ + E  D  D    +D+S  +      PK  K K  
Sbjct: 195 PDFGATKTRRAVKRPVPYDDYQKEYSEESSDMTDNDGSVDDSYFE------PKSKKTKSA 248

Query: 487 LFGDFDPQ 510
              +F PQ
Sbjct: 249 GLENFKPQ 256


>Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical
           protein VC27A7L.1 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 480 FRFTPFRSFFVQIFHIGFIH 421
           FRF   RS F+ I ++GFIH
Sbjct: 38  FRFIDNRSNFIAIIYVGFIH 57


>Z92796-6|CAB63232.1|  405|Caenorhabditis elegans Hypothetical
           protein H25K10.7 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 264 MFTQIHVIYGFLENSLSNW 208
           ++T  HV+Y FL+N +SN+
Sbjct: 79  LYTMFHVVYVFLDNIVSNY 97


>U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.1 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 480 FRFTPFRSFFVQIFHI--GFIHTKDIIIIIEVFRSYLS 373
           F+FTPF+ + + IF +   F H +D+  I     +  S
Sbjct: 209 FQFTPFQQYKISIFAVDDSFCHNQDVFHIFNTTNATFS 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,624,006
Number of Sequences: 27780
Number of extensions: 343101
Number of successful extensions: 915
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)