Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30g05
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    29   0.51 
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   3.6  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    27   3.6  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    27   3.6  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.3  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    25   8.4  

>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 25/73 (34%), Positives = 33/73 (45%)
 Frame = -2

Query: 344 SVPIVLSIDLFLYLICCIDFCIKCFNVSSLVMMSHGIVGKFLHKTFCMSATTLSRASSCE 165
           S+P + S+ L L  +  I+  IKCF  S        IVG  +  T   S+   S AS+  
Sbjct: 322 SLPSIQSLVLRLIHLGSIEHAIKCFQSSYNASFLVNIVG--VVATLSSSSEENSEASNLS 379

Query: 164 ERFSLS*NCETIL 126
             F  S N E IL
Sbjct: 380 TLFEKSGNFEEIL 392


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 94  AIILRNNGLIHKMVSQFQDKENLSSHDEARDNVVALMQNVLCKNFPTI 237
           +IIL       +M SQ  D E+ ++HDE + N+  ++ +++ +  P I
Sbjct: 544 SIILTRLETSIQMQSQILDVEDRANHDELQSNLCNVLTSIIRRFGPDI 591


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 142 FQDKENLSSHDEARDNVVALMQNVLCKNFPT 234
           +Q       H + ++N++    NV C+NFPT
Sbjct: 236 YQWSHEYRPHTQYQNNLLRAQPNVNCENFPT 266


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 488 YL*MDVKKYVNFIHTKSNRRTRSMEETNTDILK 586
           Y   DV+K VN++  K++ +  + E+ NTD  K
Sbjct: 61  YYYFDVEKSVNYLLQKASSKAGAKEKQNTDSQK 93


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 103 LRNNGLIHKMVSQFQDKENLSSHDEARDNVVALMQNVLCKNFPTIPCDIITKDETL 270
           L  NG+ H ++ + + + +L S     D +V  M+N+  KN PT        D+TL
Sbjct: 192 LSKNGIKHLIIYKEKLRFSLESRKSRVDEIVNEMKNMCGKN-PTSELPTNYSDKTL 246


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 617 SGISTDIDNFSSECPYS 567
           SG ST I  F +ECPY+
Sbjct: 123 SGKSTQIPQFLNECPYA 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,263
Number of Sequences: 5004
Number of extensions: 53796
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)