Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30f22
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ... 33 0.20
AC024826-1|AAY86307.1| 221|Caenorhabditis elegans Egr (early gr... 28 5.7
Z92786-7|CAB07209.1| 145|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z32683-3|CAA83620.1| 124|Caenorhabditis elegans Hypothetical pr... 27 7.5
U41994-7|AAY55868.1| 155|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF440508-1|AAL34096.1| 144|Caenorhabditis elegans SKR-5 protein. 27 7.5
AF040643-12|AAB94964.2| 658|Caenorhabditis elegans Hypothetical... 27 7.5
Z99171-2|CAB16314.1| 710|Caenorhabditis elegans Hypothetical pr... 27 10.0
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n... 27 10.0
AJ002907-1|CAA05742.1| 57|Caenorhabditis elegans protein tyros... 27 10.0
AF475094-1|AAL84635.1| 533|Caenorhabditis elegans SRC-1 protein. 27 10.0
AF419171-1|AAN31394.1| 533|Caenorhabditis elegans protein tyros... 27 10.0
AC084161-5|AAK29735.4| 533|Caenorhabditis elegans Src oncogene ... 27 10.0
>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
protein R155.3 protein.
Length = 1165
Score = 32.7 bits (71), Expect = 0.20
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +3
Query: 279 VKSGGPFVKTFNSGKSCLFSLKEADINKAMSKFPIKVTVYKSLPCGCLPTKIVMGEATID 458
+K+ + +T + K +S KE N + ++ S+ LP+K G+ ID
Sbjct: 63 LKASVTYTQTLSLVKYNNYSQKETVKNSEVVYSSLQKVYTSSIALSELPSKASNGDKIID 122
Query: 459 MTKEFVQARKKFLEDPSNVS--YEALKDAFRIVGS 557
M F ++ K ED ++ YE LK V S
Sbjct: 123 MLNSFEKSIKSLTEDSPSIGTLYELLKSRHLRVSS 157
>AC024826-1|AAY86307.1| 221|Caenorhabditis elegans Egr (early
growth factor responsefactor) homolog protein 2 protein.
Length = 221
Score = 27.9 bits (59), Expect = 5.7
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = -2
Query: 430 FVGKQPQGRDLYTVTFIGNLDIALFISASFREKRHDLPL--LNVLTKGPPLLTTQAPGSS 257
F G PQ + +GN+ + I+ + +K +L L + + + GP L +PG S
Sbjct: 12 FFGFPPQTAETKLKDLLGNISFGVPINGNNEQKSEELKLKDIEISSTGPSGL--DSPGLS 69
Query: 256 SHISRGSTDGHSIFTHVLKSLSEKQGL 176
+ + + S + H+L++L+ K G+
Sbjct: 70 AAMFQFS----PMVEHLLQNLTNKAGV 92
>Z92786-7|CAB07209.1| 145|Caenorhabditis elegans Hypothetical
protein F47H4.10 protein.
Length = 145
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 184 QGLFANTILS-TNTSRRKSPSSCLAIFNYGNGKN 86
+GLF T S N+ + KSP A+FN GN N
Sbjct: 110 KGLFNVTCKSIANSIKGKSPEEIRAVFNLGNETN 143
>Z32683-3|CAA83620.1| 124|Caenorhabditis elegans Hypothetical
protein R07E5.5 protein.
Length = 124
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 348 ADINKAMSKFPIKVTVYKSLPC 413
AD+ KA+S + K T+YK L C
Sbjct: 53 ADVEKALSVYKEKDTIYKCLQC 74
>U41994-7|AAY55868.1| 155|Caenorhabditis elegans Hypothetical
protein F59A6.10 protein.
Length = 155
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 186 FSDKDFRTCVNIECPSVEPLEICDDDPGACV 278
F D D TC++ CP P CD+ PG CV
Sbjct: 17 FCDAD--TCIDKFCP---PGTFCDERPGPCV 42
>AF440508-1|AAL34096.1| 144|Caenorhabditis elegans SKR-5 protein.
Length = 144
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 184 QGLFANTILS-TNTSRRKSPSSCLAIFNYGNGKN 86
+GLF T S N+ + KSP A+FN GN N
Sbjct: 109 KGLFNVTCKSIANSIKGKSPEEIRAVFNLGNETN 142
>AF040643-12|AAB94964.2| 658|Caenorhabditis elegans Hypothetical
protein F14D2.9 protein.
Length = 658
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 242 RLDRWTLNIHTCSKIFVRKTRAFCEYNF 159
RLDR L+I+ C+ + +R F Y F
Sbjct: 89 RLDRMFLHIYLCTSFIEKHSRRFLAYGF 116
>Z99171-2|CAB16314.1| 710|Caenorhabditis elegans Hypothetical
protein F47G4.2 protein.
Length = 710
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 305 FNKRSTTFNNASSWIVIAYLQRLD-RWTLNI 216
FN +S F+ SS V A L RLD +W+ NI
Sbjct: 22 FNSKSYAFDQESSNEVYAQLLRLDPQWSYNI 52
>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
nucleotide transhydrogenaseprotein 1 protein.
Length = 1041
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 447 ATIDMTKEFVQARKKFLEDPSNVS 518
AT+ F+Q FLEDPSN +
Sbjct: 669 ATLTCLANFIQEHPHFLEDPSNAA 692
>AJ002907-1|CAA05742.1| 57|Caenorhabditis elegans protein tyrosine
kinase protein.
Length = 57
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 285 SGGPFVKTFNSGKSCLFSLKEADINKAMS--KFPIKVTVYKSLPCGCLPTK 431
SG P VK + G + L E DI +A + KFPIK T ++ CG K
Sbjct: 8 SGVPVVKVADFGLAR--KLMEEDIYEARTGAKFPIKWTAPEAATCGNFTVK 56
>AF475094-1|AAL84635.1| 533|Caenorhabditis elegans SRC-1 protein.
Length = 533
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 285 SGGPFVKTFNSGKSCLFSLKEADINKAMS--KFPIKVTVYKSLPCGCLPTK 431
SG P VK + G + L E DI +A + KFPIK T ++ CG K
Sbjct: 394 SGVPVVKVADFGLAR--KLMEEDIYEARTGAKFPIKWTAPEAATCGNFTVK 442
>AF419171-1|AAN31394.1| 533|Caenorhabditis elegans protein tyrosine
kinase protein.
Length = 533
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 285 SGGPFVKTFNSGKSCLFSLKEADINKAMS--KFPIKVTVYKSLPCGCLPTK 431
SG P VK + G + L E DI +A + KFPIK T ++ CG K
Sbjct: 394 SGVPVVKVADFGLAR--KLMEEDIYEARTGAKFPIKWTAPEAATCGNFTVK 442
>AC084161-5|AAK29735.4| 533|Caenorhabditis elegans Src oncogene
related protein 1 protein.
Length = 533
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 285 SGGPFVKTFNSGKSCLFSLKEADINKAMS--KFPIKVTVYKSLPCGCLPTK 431
SG P VK + G + L E DI +A + KFPIK T ++ CG K
Sbjct: 394 SGVPVVKVADFGLAR--KLMEEDIYEARTGAKFPIKWTAPEAATCGNFTVK 442
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,630
Number of Sequences: 27780
Number of extensions: 321714
Number of successful extensions: 961
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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