Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f20
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    31   0.13 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   3.7  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   6.4  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   6.4  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 252 KRIYLNYFIKISMAYVKEAFSSACNIWEAIHNDPFNWNLFKSLTFFFLGLKLF 410
           K +  N FI + + + +   + + N  E +     +WN F +L F  LG+  F
Sbjct: 189 KNVLWNSFILLILGFARMFLTKSINYQEHVSEYGMHWNFFFTLGFMALGVFFF 241


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/73 (20%), Positives = 31/73 (42%)
 Frame = +3

Query: 213 QQSIPQTFCREFEKRIYLNYFIKISMAYVKEAFSSACNIWEAIHNDPFNWNLFKSLTFFF 392
           Q S+ +T+ R   K  +   F   +   ++++    CN+ +      F+W +       F
Sbjct: 755 QVSLAETYVR-LAKLYHARGFYSRAADSLEKSIQICCNVLKEDITSIFSWEILGDACLSF 813

Query: 393 LGLKLFHDMARNA 431
             LK +H+   N+
Sbjct: 814 CQLKNYHNRFPNS 826


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 290 GLCEGGLFECL 322
           G+CEGG F CL
Sbjct: 143 GICEGGFFPCL 153


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 306 AFSSACNIWEAIHNDPFNW 362
           AF SAC  W  +HN  F +
Sbjct: 2   AFLSACTSWRHVHNAGFTF 20


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,194
Number of Sequences: 5004
Number of extensions: 26669
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)