Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f19
         (639 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22Z16 Cluster: Zinc finger domain, LSD1 subclass famil...    33   4.4  
UniRef50_A0C8L8 Cluster: Chromosome undetermined scaffold_159, w...    33   7.7  

>UniRef50_Q22Z16 Cluster: Zinc finger domain, LSD1 subclass family
           protein; n=1; Tetrahymena thermophila SB210|Rep: Zinc
           finger domain, LSD1 subclass family protein -
           Tetrahymena thermophila SB210
          Length = 1357

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 13  CQLFDIFHQESSQMNFLCKKNYQY*QNTTKM*LEMADKSCEQCS 144
           CQ  D+F+Q++S+M        QY QNT+       D SC  CS
Sbjct: 822 CQAPDLFYQQTSKMCVQTCNTNQY-QNTSNQTCSSCDPSCASCS 864


>UniRef50_A0C8L8 Cluster: Chromosome undetermined scaffold_159,
           whole genome shotgun sequence; n=3; Eukaryota|Rep:
           Chromosome undetermined scaffold_159, whole genome
           shotgun sequence - Paramecium tetraurelia
          Length = 1529

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 7   TICQLFDIFHQESSQMNF---LCKKNYQY*QNTTKM*LEMADKSCE 135
           T+   FDIF+  ++Q+     LCKK+Y Y Q T +  L+  D  CE
Sbjct: 730 TLDMNFDIFNFTTNQVTTACALCKKHYHYNQGTKQCELKSNDDDCE 775


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,180,230
Number of Sequences: 1657284
Number of extensions: 12738905
Number of successful extensions: 29664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29644
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)