Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f19
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217     29   3.1  
09_06_0288 - 22051412-22051515,22051572-22052103                       29   4.1  
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918...    28   5.4  
05_07_0293 + 29031318-29031812,29032096-29032158,29032365-290324...    28   5.4  
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    28   7.2  
03_05_0329 - 23211636-23211857,23211946-23212079,23212170-232124...    28   7.2  
02_05_0664 + 30717551-30719491                                         27   9.5  

>05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217
          Length = 443

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 315 PPHYFIASLQNFSVRIHQLHLLKWIHKH 398
           P H+ IAS+ + S R+  L L + +H+H
Sbjct: 9   PDHFVIASVASVSARLRSLRLGRQLHEH 36


>09_06_0288 - 22051412-22051515,22051572-22052103
          Length = 211

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 135 AMFSNPPPSNIIDDEDIKVHTEIIILNVAQDDQPRVPPEV 254
           AM++ PPP    D +D    T II       D+  + PEV
Sbjct: 109 AMYTAPPPLRSSDGDDDDAATTIITTRAGPVDEHNLQPEV 148


>11_08_0089 -
           28288129-28288832,28290702-28290831,28291563-28291856,
           28292000-28292098,28292199-28292285,28292524-28292805
          Length = 531

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 338 PAEF*RQDSSTTPFEMDPQACEPCRSPSQCYETRIFNASCLQDVFWLCQVHRKH 499
           P E  +Q  +TTP ++D +  E  ++  +CY  +I +  C      L    ++H
Sbjct: 32  PPEQQQQAGTTTPDDIDDEVMEYYKAKQRCYALQIRDYCCYLQCHHLLLQQQQH 85


>05_07_0293 +
           29031318-29031812,29032096-29032158,29032365-29032490,
           29032783-29032911,29033161-29033311,29033853-29033962,
           29034502-29034607,29034697-29034894,29034988-29035030,
           29035129-29035207
          Length = 499

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 150 PPPS--NIIDDEDIKVHTEIIILNVAQDDQPRVPPEVSNLQPV*SGRNSFYLCS 305
           PPP+   + ++E+      + +L   Q+D P  PPEV NL P    R S   CS
Sbjct: 54  PPPAAEEVGEEEEDDDAPPLRLLEPPQEDDP-FPPEVLNLFPPSCFRCSHLFCS 106


>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 414 HLHNVTKQEYLTHR--VYRMSFGCVRSTESTNSPCCTSICCTSKIGLE 551
           H+  + +Q++  H    +R+  G  RS  S +S  C+SIC  S I +E
Sbjct: 309 HVVGLVRQKFTNHHPTAFRIKVGW-RSKMSLDSVDCSSICVRSSIQVE 355


>03_05_0329 -
           23211636-23211857,23211946-23212079,23212170-23212476,
           23212760-23213113
          Length = 338

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 435 QEYLTHRVYRMSFGCVRSTESTNSPCCTS 521
           +EY+ H V + S  C  S+ +++S CC S
Sbjct: 61  EEYMDHLVSKESSFCSSSSSTSSSSCCFS 89


>02_05_0664 + 30717551-30719491
          Length = 646

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +3

Query: 315 PPHYFIASLQNFSVRIHQLHLLKWIHKHVNPAGHLHNVTKQEYLTHRVYRMSFGCVRSTE 494
           P  Y +A L +       LH  + IH H+   G   NV  Q  L H    M   C+R  +
Sbjct: 562 PDKYTLAGLLSLCRYQGLLHYGRQIHAHLIKMGSEMNVVMQTILVH----MYIKCMRQQD 617

Query: 495 STN 503
           + N
Sbjct: 618 AEN 620


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,446,673
Number of Sequences: 37544
Number of extensions: 367990
Number of successful extensions: 751
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)