Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f18
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   3.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.0  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    24   9.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    24   9.3  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 164 KKVTGMDSFVQS*SDQWTPGH*RP 93
           K   GM+  V S SD WT GH  P
Sbjct: 15  KLCAGMEINVPSSSDVWTSGHIEP 38


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 21  LLVRLG**DFTICSCISEG--NRHTSWTSMARSPLVRSRLNETIHSG 155
           +LV+ G    TI  C S     R T   S  RS L++S L E IH G
Sbjct: 539 MLVKNGDEALTIAICDSRCLIARGTESNSFKRSDLLKSLLEEIIHIG 585


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 163 RKLPEWIVSFNLDLTNGL 110
           ++L EWI   N+DL+ G+
Sbjct: 61  KRLDEWITIDNIDLSKGI 78


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 8   VRVSFTCQAWLIRFYNMQLHIRGQSTH 88
           V+   + +AWL+R     LH+R ++ H
Sbjct: 402 VKPELSSEAWLLRTEMSPLHLRLKNAH 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,250
Number of Sequences: 5004
Number of extensions: 24644
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)