Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f18
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1767 + 29338867-29338912,29339261-29339325,29339571-293396...    28   2.9  
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    27   3.8  
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    27   5.0  
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462...    27   6.6  

>07_03_1767 +
           29338867-29338912,29339261-29339325,29339571-29339642,
           29339913-29339956,29340047-29340158,29340879-29340950,
           29341449-29341511,29341957-29342034,29342110-29342202,
           29342294-29342413,29342762-29342845,29343094-29343309,
           29343401-29343448,29343761-29343871,29344170-29344267,
           29345004-29345248,29345764-29345832,29345919-29345983,
           29346168-29346337,29346434-29346512,29346614-29346869,
           29347416-29347461,29347602-29347710,29347820-29347882,
           29350075-29350107,29350924-29351442
          Length = 991

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 184 VRKDQ-GRRKLPEWIVSFNLDLTNGLLAI 101
           V KD+  + KL EW  S NLD  NG + +
Sbjct: 157 VEKDKLAKSKLEEWFQSINLDKENGKVVV 185


>01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,
            4734038-4734241,4734695-4734802,4735930-4736369,
            4736463-4736541
          Length = 1049

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 272  EATKTSVSTVRCIINEAKGSGLLIVLGTPGKKRSGKKKVTGM 147
            E +   +S + C++  +  S  L V GT  K+   +KK  GM
Sbjct: 908  ERSDIDISKLYCVLAASSASSCLDVTGTRSKQFEIRKKTAGM 949


>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 97  RQWPGVHWSDQD*TKLSIPV 156
           R WPG+HWSD        PV
Sbjct: 51  RIWPGLHWSDSSTPLYCAPV 70


>08_01_0533 +
           4625376-4625709,4625799-4625966,4627428-4627689,
           4627787-4627934,4628453-4628496,4628812-4628859,
           4629245-4630509,4630741-4630839,4630916-4631097,
           4631186-4631246,4631488-4631725,4631818-4631971,
           4632042-4632335
          Length = 1098

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 66  ISEGNRHTSWTSMARS 113
           +S+GN H  WT+MA+S
Sbjct: 421 LSDGNGHVLWTTMAKS 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,612,058
Number of Sequences: 37544
Number of extensions: 157525
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)