Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f18
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z99283-3|CAB16538.1|  327|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    26   7.9  

>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 142 LSIPVTFFFPDLFLPGVPSTMSKPEPLASLIMHLTVLTDVFVAS 273
           L + V+     LF+  +P T SK E L  L  H   + DV V S
Sbjct: 272 LKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYS 315


>Z99283-3|CAB16538.1|  327|Caenorhabditis elegans Hypothetical
           protein Y70C5C.4 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 136 TKLSIPVTFFFPDLFLPGVPSTMSKPEPLASLIMHLT-VLTDVFVA 270
           + +  PV  F   + L   PS+MSK +  + L+MH T V  DV+++
Sbjct: 23  SSIQCPVNIFATYILLFKTPSSMSKVK-FSMLVMHFTFVWLDVYLS 67


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 48   FTICSCISEGNRHTSWTSMARS 113
            F I  C   G  HT WT   RS
Sbjct: 4931 FIIICCFENGTSHTEWTGTLRS 4952


>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
            F22G12.5 protein.
          Length = 2396

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 205  SKPEPLASLIMHLTVLTDVFVAS 273
            S+PE LA L + L VLTD  + S
Sbjct: 1134 SEPEQLAQLYLQLWVLTDAVIKS 1156


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
            F22G12.5 protein.
          Length = 2396

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 205  SKPEPLASLIMHLTVLTDVFVAS 273
            S+PE LA L + L VLTD  + S
Sbjct: 1134 SEPEQLAQLYLQLWVLTDAVIKS 1156


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 154 PEWIVSFNLDLTNGL-LAIDVQDVCRLPSDMQLHIVK 47
           P W+ SFN DL+  L L + + DV   P  +QL  ++
Sbjct: 248 PFWVESFNSDLSFALPLIMSITDVITTPWLIQLSYLR 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,642,879
Number of Sequences: 27780
Number of extensions: 138466
Number of successful extensions: 279
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)