Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f16
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    28   0.53 
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    25   2.8  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   2.8  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    24   6.5  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    24   8.6  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    24   8.6  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    24   8.6  

>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 27.9 bits (59), Expect = 0.53
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = +1

Query: 106 TEENKYYEDNMVRKIIQKITNETLVQKM 189
           TEE+  YE  +VRK++ ++ +E+++ ++
Sbjct: 829 TEEDIIYEVGLVRKVLTRLVHESIIMEI 856


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 177 SPKNVGLQFHNVSKPEPQYLNQCL 248
           S +   +Q H    PEP YL+ CL
Sbjct: 269 SGRQYPVQIHYTYTPEPDYLDACL 292


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 210 VSKPEPQYLNQCLNHTEM 263
           +S   PQY+N+C+N+  M
Sbjct: 5   ISSTNPQYINKCVNNGTM 22


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 115 NKYYEDNMVRKIIQKITNETLVQKMLDYSFIMFPNLSLN 231
           N+ +E  ++RK++  I NE  V+ + DY    + +L ++
Sbjct: 749 NELWEP-ILRKLLDHIQNEPSVEMLADYFECFYQSLEIS 786


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 210 VSKPEPQYLNQCLNHTEMRFF 272
           V +PEPQY N  + +T+   F
Sbjct: 82  VGQPEPQYGNNAVTNTKYDLF 102


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 279 TFKKTSSRCD*GIDLNIEAQVWKHYETV 196
           TF+KT ++    +D+N  +++WK +  V
Sbjct: 240 TFRKTDAQRASRVDVNKASRLWKAFHEV 267


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 198 QFHNVSKPEPQYLNQCLNHT 257
           +F  VSK E + L  C NHT
Sbjct: 671 KFKTVSKREVEALVNCFNHT 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,250
Number of Sequences: 5004
Number of extensions: 24764
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)