Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f16
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0235 + 21588212-21589029,21589426-21591358                       28   2.6  
04_03_0563 - 17195605-17196681                                         27   4.6  
10_08_0893 + 21354513-21354589,21354831-21354971,21355448-213556...    27   6.1  
04_01_0124 - 1289034-1289087,1289181-1289283,1290943-1291106           27   6.1  

>11_06_0235 + 21588212-21589029,21589426-21591358
          Length = 916

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +2

Query: 20  INNTMKI*NASLLYTSSKSCYNYVYVWRKPKKINTMKIIWLGKLFKRLPMKL*SKKC 190
           + N   +   SL   S   C N+    RK   +  +KI WLG+  K L   L    C
Sbjct: 662 VGNLTSLQELSLGLVSIDICSNFAVEVRKLSDLRILKISWLGETDKGLLKALVESLC 718


>04_03_0563 - 17195605-17196681
          Length = 358

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 47  ASLLYTSSKSCYNYVYVWRKPKKI 118
           AS++  SS  C   VYVWR PK +
Sbjct: 168 ASVVVDSSSGC-KIVYVWRDPKDV 190


>10_08_0893 +
           21354513-21354589,21354831-21354971,21355448-21355634,
           21355801-21355845
          Length = 149

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 210 VSKPEPQYLNQCLNHTEMRFF*T*I--VQWKWYL-NLKLLFVLC 332
           V K  P YL  CL+H  M    + +  + W +Y+  LK   V+C
Sbjct: 91  VIKTLPDYLRTCLSHCFMHIDGSPLHDIVWSYYIEKLKCAIVIC 134


>04_01_0124 - 1289034-1289087,1289181-1289283,1290943-1291106
          Length = 106

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 95  RRHNYNNSYCLYIISLR 45
           + HNYNN+Y L+ I +R
Sbjct: 62  QHHNYNNAYTLHAIDVR 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,641,292
Number of Sequences: 37544
Number of extensions: 122037
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)