Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f16
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   3.5  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   3.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   3.5  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   3.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   3.5  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 103 KTEENKYYEDNMVRKIIQKITNETLVQKMLDYSFIMFPNLS 225
           ++ + K  E +   KII  ++N+T+     +Y  + + N++
Sbjct: 66  RSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNIN 106



 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 334 IHNTNSNFKFKYHFHCTIYV 275
           IHN N+N+K K  ++   Y+
Sbjct: 90  IHNNNNNYK-KLQYYNINYI 108


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 103 KTEENKYYEDNMVRKIIQKITNETLVQKMLDYSFIMFPNLS 225
           ++ + K  E +   KII  ++N+T+     +Y  + + N++
Sbjct: 66  RSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNIN 106



 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 334 IHNTNSNFKFKYHFHCTIYV 275
           IHN N+N+K K  ++   Y+
Sbjct: 90  IHNNNNNYK-KLQYYNINYI 108


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 103 KTEENKYYEDNMVRKIIQKITNETLVQKMLDYSFIMFPNLS 225
           ++ + K  E +   KII  ++N+T+     +Y  + + N++
Sbjct: 66  RSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNIN 106



 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 334 IHNTNSNFKFKYHFHCTIYV 275
           IHN N+N+K K  ++   Y+
Sbjct: 90  IHNNNNNYK-KLQYYNINYI 108


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 103 KTEENKYYEDNMVRKIIQKITNETLVQKMLDYSFIMFPNLS 225
           ++ + K  E +   KII  ++N+T+     +Y  + + N++
Sbjct: 66  RSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNIN 106



 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 334 IHNTNSNFKFKYHFHCTIYV 275
           IHN N+N+K K  ++   Y+
Sbjct: 90  IHNNNNNYK-KLQYYNINYI 108


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 103 KTEENKYYEDNMVRKIIQKITNETLVQKMLDYSFIMFPNLS 225
           ++ + K  E +   KII  ++N+T+     +Y  + + N++
Sbjct: 299 RSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNIN 339



 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 334 IHNTNSNFKFKYHFHCTIYV 275
           IHN N+N+K K  ++   Y+
Sbjct: 323 IHNNNNNYK-KLQYYNINYI 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,863
Number of Sequences: 438
Number of extensions: 1869
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)