Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30f15
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 176 2e-45
SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual 32 0.091
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar... 30 0.37
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 2.0
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 2.0
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 2.6
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 4.5
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 6.0
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 7.9
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 176 bits (429), Expect = 2e-45
Identities = 88/164 (53%), Positives = 113/164 (68%), Gaps = 2/164 (1%)
Frame = +1
Query: 130 MPNIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQW 309
M IKL SSDNE FVVD IA+ S+ IK PLPNV+S +L+KV++W
Sbjct: 1 MSKIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPI---PLPNVSSNVLRKVLEW 57
Query: 310 ATYHKDD--PPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVT 483
+HK+D E+ + + K++ DI WD F+ VDQ LFE++LA+NYLDIK LLD
Sbjct: 58 CEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTG 117
Query: 484 CKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 615
CKTVANMI+GK+PE+IRKTFNI NDFT EE+Q+RKENEW E++
Sbjct: 118 CKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWAEDR 161
>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 97
Score = 31.9 bits (69), Expect = 0.091
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 139 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 318
++L S D VF+++ EIA S TI+ P++ + +L+KV ++ Y
Sbjct: 6 VRLISGDGFVFILEKEIACLSGTIRAILNEGIFSEAQKNECTFPDIRATLLEKVCEYLHY 65
Query: 319 ---HKDDPPLPEDD 351
+K+ +P+ D
Sbjct: 66 NYRYKNQLDIPKFD 79
>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.37
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 334 PLPEDDENKEKRTDDISSWDADFLKVDQGT 423
P+P D NK T D+SSW+ D+ + G+
Sbjct: 9 PIPRSDSNK---TSDVSSWEEDYELISLGS 35
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 472 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQV 585
L VT KTV + G TP+ R+ N+ D + + V
Sbjct: 96 LQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSHV 133
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 334 PLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILA-ANYLDIKGLLDVTCKTVA 498
P +DD N + +DD S+ D ++D L E +L N + L D+T T+A
Sbjct: 207 PEADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLKYMNRCSTQDLADMTGCTLA 262
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +2
Query: 65 HFRLKINKFHLIVNIQILEKTRCQILSCNHQTTRSSLLMLKSPNA 199
+F+LK ++L+ + ++L K+ N+Q+T + + + KSPNA
Sbjct: 31 NFKLKSPSYYLLNSFKLLVKSEG-----NNQSTTADVTLTKSPNA 70
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 71 RLKINKFHLIVNIQILEKTRCQILSCNHQTTRSSLLMLKS 190
+LKI V + ILEK ++ C+H+ S L L S
Sbjct: 208 KLKIENNSRSVKLSILEKALKEVKGCDHEILVSYYLQLGS 247
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 665 HSDNT*RCLQIAFIMVYFS 609
H+D+ RCL++AF YFS
Sbjct: 746 HADDFFRCLEVAFDYPYFS 764
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 98 LSEIYLSSNENALMFW 51
L+ IY++ N+NAL FW
Sbjct: 537 LAPIYVTFNDNALTFW 552
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,946
Number of Sequences: 5004
Number of extensions: 55014
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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