Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f13
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    32   0.078
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   2.2  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 423  GPILRGPRRTDNLVTNCSRERSFSQLKRIKNELRKNNVT 539
            G + R PR ++N  TN SRERS     R  N+ +++ VT
Sbjct: 1477 GNVNRNPRVSNNNSTNVSRERSSEANHRTSNDNKRDEVT 1515


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 149 IVPVEISDLFMALDSIRCQSHLSFICIYCVYTKCVLSLCPRNSQQV 286
           ++PV+I D+ +   S+    HL+F+        C     P NS Q+
Sbjct: 586 VIPVDICDIRLTFQSMSAMGHLTFLDNRIAVVSC--DYLPSNSVQL 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,381
Number of Sequences: 5004
Number of extensions: 64841
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)