Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f13
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.59 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   1.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   1.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   1.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.8  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 110 DKRPVDLASIQL*IVPVEISDLFMALDSIRCQ 205
           DK+ +DL SI +  +P+++ D    LD ++C+
Sbjct: 327 DKK-LDLDSIDMMQLPIQLDDGIDILDDVKCE 357


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 321 WIYHSALCRPWMTC 280
           WI+   LC+ W+TC
Sbjct: 102 WIFGIHLCKLWLTC 115


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 321 WIYHSALCRPWMTC 280
           WI+   LC+ W+TC
Sbjct: 102 WIFGIHLCKLWLTC 115


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 321 WIYHSALCRPWMTC 280
           WI+   LC+ W+TC
Sbjct: 102 WIFGIHLCKLWLTC 115


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 278 ENSLGINSVHTLCIHSKYR*RTGDSGIVLNPTP*TNP 168
           E+  GI S H + I    R    DSG+V N  P  +P
Sbjct: 121 EDCSGIVSAHKIAIDEYERLWVLDSGLVNNTQPMCSP 157


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 169 GFVYGVGFNTMPESPVLHLYLLCIHKVCTEFMP 267
           GF+ G+G     ++ V+ L L+ I K    F P
Sbjct: 214 GFIDGLGLGDNTKAAVMRLGLMEIIKFVNIFFP 246


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 117 GLSIWLRFNCKSSQSRY 167
           GLS +LRF C S++  Y
Sbjct: 268 GLSPYLRFGCLSTRLFY 284


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 215 SFICIYCVYTKCVLSLCPRN 274
           +F+CI  VY   ++   PRN
Sbjct: 401 AFLCISLVYIIMLIIFIPRN 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,452
Number of Sequences: 438
Number of extensions: 4731
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)