Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30f09
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 77 1e-15
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub... 44 7e-06
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 37 0.001
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 1.5
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 27 1.5
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 4.5
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.0
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 6.0
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 24 7.9
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 24 7.9
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 24 7.9
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 77.0 bits (181), Expect = 1e-15
Identities = 34/62 (54%), Positives = 42/62 (67%)
Frame = +3
Query: 9 KFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNRW 188
K +E + AQ A Q T++ CGKCK+K +Y Q+QTRS+DEPMTTF C CGNRW
Sbjct: 231 KLEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRW 290
Query: 189 KF 194
KF
Sbjct: 291 KF 292
>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 44.4 bits (100), Expect = 7e-06
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +3
Query: 3 REKFIKEAIDDA---QLATVQGTKTEML-KCGKCKKKNCTYNQLQTRSSDEPMTTFVLCN 170
R +F ++ +DD + A +TE+ + KC + QLQ RS+DEPM+TF C
Sbjct: 41 RHEFAQKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCT 100
Query: 171 ECGNRWK 191
+C +W+
Sbjct: 101 KCKFQWR 107
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 36.7 bits (81), Expect = 0.001
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 78 KCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNRW 188
KC KC + T++ LQ RS+DE T F C C ++
Sbjct: 79 KCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKF 115
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 278 VIKHMILKMYHYSKYLNHLSRLFRAVLAKF 189
VI+ ++ K YS+Y+N L +LAKF
Sbjct: 829 VIQSIVRKNIAYSRYINELRESSATLLAKF 858
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 163 FVMNVVIAGNFAKTALNNLERWFKYLL**YIFSIMCFITFTMIWFLANINALLLSL 330
F++ V+ NF + N YL+ +S + FI + ++ FL N +ALLL +
Sbjct: 155 FLLPVITRDNFISLFMGNT----LYLVALCYYSYLTFIGYQILPFLKNTHALLLPI 206
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 4.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 199 KTALNNLERWFKYLL**YIFSIMCFITFTMIWFLANINALLLS 327
KT L +ER+F++ L + I F + WF + N L +S
Sbjct: 271 KTGLT-VERFFQHFLARFFCLIFFPFLFFLFWFYMHFNILTIS 312
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 24.6 bits (51), Expect = 6.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 132 FLFVVDCRYSSSFCICHILTFLFWCL 55
FL + Y SSF I H L F F C+
Sbjct: 138 FLSQIFIVYFSSFPILHFLFFFFLCV 163
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 6.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Frame = +3
Query: 141 EPMTTFVLCNECG-----NRWKFC*DCSKQS 218
EP+ + +LC ECG N C DC K +
Sbjct: 16 EPIASTILCCECGVPTPPNAAAMCMDCIKMT 46
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 24.2 bits (50), Expect = 7.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 71 FCFGALNCGKLCIINSFFN 15
F G+ +CGK +++SF N
Sbjct: 425 FVVGSKSCGKTALLSSFIN 443
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 208 LNNLERWFKYLL**YIFSIMCFITFTMIWFLANI 309
LN ++RWFK+++ + F + +I + +A+I
Sbjct: 3 LNYIQRWFKWVIPTFGFLAIHYIYIISLTIIASI 36
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 24.2 bits (50), Expect = 7.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 62 GALNCGKLCIINSFFNELFS 3
G GK C++N F N+ FS
Sbjct: 15 GDSGVGKTCLMNQFVNQKFS 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,749
Number of Sequences: 5004
Number of extensions: 27924
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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