Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30f09
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0445 - 33982018-33982965,33984308-33984463 76 9e-15
07_01_0873 - 7257016-7257957,7260083-7260262 75 3e-14
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 41 4e-04
03_05_0889 + 28543106-28543354,28544379-28544465,28544548-285446... 33 0.066
12_02_0765 + 22980542-22980570,22980673-22980748,22981113-229812... 32 0.15
03_01_0015 + 126611-126639,126718-127099 30 0.81
03_01_0324 - 2525712-2525897,2526181-2526288,2526330-2526421,252... 28 3.3
09_02_0383 - 8259156-8261843 27 5.7
07_03_1705 + 28848293-28848321,28848766-28848841,28848940-288490... 27 5.7
07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529... 27 7.6
>03_06_0445 - 33982018-33982965,33984308-33984463
Length = 367
Score = 76.2 bits (179), Expect = 9e-15
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 9 KFIKE-AIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNR 185
K IKE A+ D + T+ KCG+C ++ TY QLQTRS+DEPMTTFV C C N
Sbjct: 304 KQIKEKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNH 363
Query: 186 WKFC 197
WKFC
Sbjct: 364 WKFC 367
>07_01_0873 - 7257016-7257957,7260083-7260262
Length = 373
Score = 74.5 bits (175), Expect = 3e-14
Identities = 30/64 (46%), Positives = 41/64 (64%)
Frame = +3
Query: 6 EKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNR 185
+K ++A+ + + T+ KCG+C ++ TY QLQTRS+DEPMTTFV C C N
Sbjct: 310 KKIEEKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNH 369
Query: 186 WKFC 197
WKFC
Sbjct: 370 WKFC 373
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 40.7 bits (91), Expect = 4e-04
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 81 CGKCKKKNCTYNQLQTRSSDEPMTTFVLC--NECGNRWK 191
C +C+ Y Q+Q RS+DEPM+TF C EC W+
Sbjct: 796 CPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWR 834
>03_05_0889 +
28543106-28543354,28544379-28544465,28544548-28544604,
28544704-28544781
Length = 156
Score = 33.5 bits (73), Expect = 0.066
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 78 KCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNEC 176
+C KCK Y Q RS+DE T F C C
Sbjct: 116 ECEKCKNPELQYYTKQLRSADEGQTVFYKCANC 148
>12_02_0765 +
22980542-22980570,22980673-22980748,22981113-22981271,
22981370-22981450
Length = 114
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 63 KTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCN-ECGNRWK 191
+T+ ++C C + Q R + FV CN CG+RW+
Sbjct: 70 RTKAVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWR 113
>03_01_0015 + 126611-126639,126718-127099
Length = 136
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 63 KTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCN-ECGNRWK 191
+T+ ++C C + Q R + FV CN C +RW+
Sbjct: 92 RTKTVRCAACGHGEAVFFQATARGEEGMTLFFVCCNLTCAHRWR 135
>03_01_0324 -
2525712-2525897,2526181-2526288,2526330-2526421,
2527861-2528038
Length = 187
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 72 MLKCGKCKKKNCTYNQLQTRSSDE 143
+LK G C KK TY Q+ +DE
Sbjct: 143 LLKAGACAKKENTYGQVPAEMADE 166
>09_02_0383 - 8259156-8261843
Length = 895
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 403 FFDLKQIILLNFKLKNHLI---YTQ*LSMTVIMHLYLQETK 290
F DLKQ+ +LN NHL+ Y ++++ LYL ++K
Sbjct: 608 FGDLKQLRILNLSFTNHLMNIPYGVISRLSMLKVLYLYQSK 648
>07_03_1705 +
28848293-28848321,28848766-28848841,28848940-28849082,
28849297-28849383,28849492-28849575,28850224-28850380,
28850521-28850606,28850995-28851226,28851351-28851471,
28851610-28851746,28852086-28852202,28852612-28852660,
28852751-28852793,28852945-28853116,28853192-28853262,
28853365-28853458,28853608-28853820,28853851-28853859,
28853895-28853999,28854266-28854586,28854664-28854789
Length = 823
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 81 CGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNRW 188
CG C+ NCT + + S E CG RW
Sbjct: 338 CGNCE--NCTRTKNERDLSKESFLLLSCIKSCGGRW 371
>07_03_1525 +
27448257-27448582,27450741-27450973,27451280-27452919,
27453129-27453575
Length = 881
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 332 VNDSNNAFIFARNQIIVNVIKHMILKMYHYSKYLNHLSRLFRAV-LAKFPAITTFITKD 159
+ +S+N F+ + +N +K+MIL H KY+ + L R + L P +T K+
Sbjct: 670 LENSHNCFVILKEPEFINKLKNMIL--IHDDKYIYVAASLLRNMCLHAQPELTELDLKE 726
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,044,847
Number of Sequences: 37544
Number of extensions: 152472
Number of successful extensions: 393
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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