Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f09
         (407 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X53670-1|CAA37710.1|  313|Drosophila melanogaster protein ( Dros...   138   3e-33
L26091-1|AAA92864.2|  313|Drosophila melanogaster transcription ...   138   3e-33
AY051843-1|AAK93267.1|  313|Drosophila melanogaster LD34766p pro...   138   3e-33
AE014134-2559|AAF53436.1|  313|Drosophila melanogaster CG3710-PA...   138   3e-33
BT023150-1|AAY55566.1|  162|Drosophila melanogaster IP09061p pro...    88   5e-18
BT022128-1|AAY51523.1|  162|Drosophila melanogaster IP08861p pro...    88   5e-18
AE014298-2184|AAF48482.2|  162|Drosophila melanogaster CG8117-PA...    88   5e-18
AE013599-3053|AAM68394.2|  108|Drosophila melanogaster CG33785-P...    46   2e-05
AE014297-3039|AAF55918.1|  120|Drosophila melanogaster CG13418-P...    36   0.016
AE014297-1835|AAF55045.1|  129|Drosophila melanogaster CG3284-PA...    36   0.027
S88139-1|AAB21674.1|  129|Drosophila melanogaster RNA polymerase...    34   0.083
S66940-1|AAB29028.2|  129|Drosophila melanogaster RNA polymerase...    33   0.11 
AF177931-1|AAF33110.1| 1162|Drosophila melanogaster adenylyl cyc...    30   1.0  
AE014296-423|AAF47621.2| 1162|Drosophila melanogaster CG5712-PA ...    30   1.0  
BT001587-1|AAN71342.1| 1162|Drosophila melanogaster RE26442p pro...    28   5.4  

>X53670-1|CAA37710.1|  313|Drosophila melanogaster protein (
           Drosophila gene forRNA polymerase II elongation factor
           DmS-II. ).
          Length = 313

 Score =  138 bits (333), Expect = 3e-33
 Identities = 57/65 (87%), Positives = 64/65 (98%)
 Frame = +3

Query: 3   REKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGN 182
           REKF+KEAI+DAQLATVQGTKT++LKC KCKK+NCTYNQLQTRS+DEPMTTFV+CNECGN
Sbjct: 249 REKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGN 308

Query: 183 RWKFC 197
           RWKFC
Sbjct: 309 RWKFC 313


>L26091-1|AAA92864.2|  313|Drosophila melanogaster transcription
           elongation factor protein.
          Length = 313

 Score =  138 bits (333), Expect = 3e-33
 Identities = 57/65 (87%), Positives = 64/65 (98%)
 Frame = +3

Query: 3   REKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGN 182
           REKF+KEAI+DAQLATVQGTKT++LKC KCKK+NCTYNQLQTRS+DEPMTTFV+CNECGN
Sbjct: 249 REKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGN 308

Query: 183 RWKFC 197
           RWKFC
Sbjct: 309 RWKFC 313


>AY051843-1|AAK93267.1|  313|Drosophila melanogaster LD34766p
           protein.
          Length = 313

 Score =  138 bits (333), Expect = 3e-33
 Identities = 57/65 (87%), Positives = 64/65 (98%)
 Frame = +3

Query: 3   REKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGN 182
           REKF+KEAI+DAQLATVQGTKT++LKC KCKK+NCTYNQLQTRS+DEPMTTFV+CNECGN
Sbjct: 249 REKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGN 308

Query: 183 RWKFC 197
           RWKFC
Sbjct: 309 RWKFC 313


>AE014134-2559|AAF53436.1|  313|Drosophila melanogaster CG3710-PA
           protein.
          Length = 313

 Score =  138 bits (333), Expect = 3e-33
 Identities = 57/65 (87%), Positives = 64/65 (98%)
 Frame = +3

Query: 3   REKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGN 182
           REKF+KEAI+DAQLATVQGTKT++LKC KCKK+NCTYNQLQTRS+DEPMTTFV+CNECGN
Sbjct: 249 REKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGN 308

Query: 183 RWKFC 197
           RWKFC
Sbjct: 309 RWKFC 313


>BT023150-1|AAY55566.1|  162|Drosophila melanogaster IP09061p
           protein.
          Length = 162

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 35/63 (55%), Positives = 50/63 (79%)
 Frame = +3

Query: 3   REKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGN 182
           R+K+++++I+ AQ+A VQGTKT+  KC +C K+NC  +QL  R  DEP+ TFV+C+ECGN
Sbjct: 101 RQKYVQDSINAAQMAKVQGTKTDQFKCERCDKRNC--SQLHIRDGDEPIITFVICDECGN 158

Query: 183 RWK 191
           RWK
Sbjct: 159 RWK 161


>BT022128-1|AAY51523.1|  162|Drosophila melanogaster IP08861p
           protein.
          Length = 162

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 35/63 (55%), Positives = 50/63 (79%)
 Frame = +3

Query: 3   REKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGN 182
           R+K+++++I+ AQ+A VQGTKT+  KC +C K+NC  +QL  R  DEP+ TFV+C+ECGN
Sbjct: 101 RQKYVQDSINAAQMAKVQGTKTDQFKCERCDKRNC--SQLHIRDGDEPIITFVICDECGN 158

Query: 183 RWK 191
           RWK
Sbjct: 159 RWK 161


>AE014298-2184|AAF48482.2|  162|Drosophila melanogaster CG8117-PA
           protein.
          Length = 162

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 35/63 (55%), Positives = 50/63 (79%)
 Frame = +3

Query: 3   REKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGN 182
           R+K+++++I+ AQ+A VQGTKT+  KC +C K+NC  +QL  R  DEP+ TFV+C+ECGN
Sbjct: 101 RQKYVQDSINAAQMAKVQGTKTDQFKCERCDKRNC--SQLHIRDGDEPIITFVICDECGN 158

Query: 183 RWK 191
           RWK
Sbjct: 159 RWK 161


>AE013599-3053|AAM68394.2|  108|Drosophila melanogaster CG33785-PA,
           isoform A protein.
          Length = 108

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +3

Query: 78  KCGKCKKKNCTYNQLQTRSSDEPMTTFVLC--NECGNRWK 191
           +C  C  K   + Q+QTRS+DEPMTTF  C  +EC + W+
Sbjct: 68  ECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWR 107


>AE014297-3039|AAF55918.1|  120|Drosophila melanogaster CG13418-PA
           protein.
          Length = 120

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 78  KCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNEC 176
           KC KC     +Y  LQ RS+DE  T F  C +C
Sbjct: 80  KCPKCNHDKMSYATLQLRSADEGQTVFFTCLKC 112


>AE014297-1835|AAF55045.1|  129|Drosophila melanogaster CG3284-PA
           protein.
          Length = 129

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 63  KTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLC--NECGNRW 188
           +TE   C KC  +   + Q QTR ++E M  + +C    C +RW
Sbjct: 84  RTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127


>S88139-1|AAB21674.1|  129|Drosophila melanogaster RNA polymerase II
           15-kda subunit protein.
          Length = 129

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 63  KTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLC--NECGNRW 188
           +TE   C KC  +   + + QTR ++E M  + +C    C +RW
Sbjct: 84  RTEDHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRW 127


>S66940-1|AAB29028.2|  129|Drosophila melanogaster RNA polymerase II
           subunit 9 protein.
          Length = 129

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 63  KTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLC--NECGNRW 188
           +TE   C KC  +     Q QTR ++E M  + +C    C +RW
Sbjct: 84  RTEDHACPKCSHREAVSFQAQTRRAEEEMRLYYVCTNQNCTHRW 127


>AF177931-1|AAF33110.1| 1162|Drosophila melanogaster adenylyl
           cyclase ACXD protein.
          Length = 1162

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -1

Query: 176 TFITKDKCGHRFIGTSCL*LIVGTVLLFAFATF-*HFCFGAL-NCGKLCIINSFFNELFS 3
           T+  + +C H +I T+C+ L++G   LF    F    CF AL   G   ++ S FN +++
Sbjct: 733 TYDERVQCFHPWILTNCMTLVIGMSFLFTRIPFIIKSCFSALIMIGYAVLVVSEFNFIYA 792


>AE014296-423|AAF47621.2| 1162|Drosophila melanogaster CG5712-PA
           protein.
          Length = 1162

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -1

Query: 176 TFITKDKCGHRFIGTSCL*LIVGTVLLFAFATF-*HFCFGAL-NCGKLCIINSFFNELFS 3
           T+  + +C H +I T+C+ L++G   LF    F    CF AL   G   ++ S FN +++
Sbjct: 733 TYDERVQCFHPWILTNCMTLVIGMSFLFTRIPFIIKSCFSALIMIGYAVLVVSEFNFIYA 792


>BT001587-1|AAN71342.1| 1162|Drosophila melanogaster RE26442p
           protein.
          Length = 1162

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -1

Query: 176 TFITKDKCGHRFIGTSCL*LIVGTVLLFAFATF-*HFCFGAL-NCGKLCIINSFFNELFS 3
           T+  + +C H +I T+C+ L++    LF    F    CF AL   G   ++ S FN +++
Sbjct: 733 TYDERVQCFHPWILTNCMTLVISMSFLFTRIPFIIKSCFSALIMIGYAVLVVSEFNFIYA 792


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,089,641
Number of Sequences: 53049
Number of extensions: 291558
Number of successful extensions: 841
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)