Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f07
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924...    29   3.8  
11_04_0391 + 17127309-17127449,17127886-17127950,17129209-171293...    28   8.7  
07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587...    28   8.7  
01_01_1027 - 8132081-8132344,8133534-8134394                           28   8.7  

>02_02_0350 +
           9239138-9240218,9240755-9240906,9241392-9241457,
           9242715-9242951
          Length = 511

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 438 DSTPLVPKWTVCTLLSATLLEGTFSSDV 355
           DS   V   T+C+LL+ATL+E  F+SD+
Sbjct: 373 DSISAVFVETICSLLAATLIELRFTSDL 400


>11_04_0391 +
           17127309-17127449,17127886-17127950,17129209-17129305,
           17129729-17130193,17130505-17130528
          Length = 263

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 537 RSTEHHLVQKVLFLIYFALEEKAMLKRHQNNNNQKRPKT 653
           +S + HL+ K  F   F   +KA   + Q N NQK+ +T
Sbjct: 117 KSRQQHLLDKHQFPKSFEFFKKARPSQRQRNKNQKQRQT 155


>07_03_1526 +
           27456426-27456700,27457936-27458023,27458129-27458725,
           27458731-27460056,27460283-27460729
          Length = 910

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 532 IFFATRISICTRRTSCFYRTIFKNRSHMRPLGF 434
           IFF     I TR     Y+  F+ R   RPLG+
Sbjct: 85  IFFLEATRIFTRNNMLDYQLFFRTRGAFRPLGW 117


>01_01_1027 - 8132081-8132344,8133534-8134394
          Length = 374

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 672 SSFEISW--FSVVFDCCCFDAFLASLFLLMRNISKIELF 562
           S   ++W   S  FD CC   F  SLFL    +S+  LF
Sbjct: 256 SMASLAWDAISASFDTCCKMLFFLSLFLFASLVSRPTLF 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,269,551
Number of Sequences: 37544
Number of extensions: 333685
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)