Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f05
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688...    30   1.6  
04_04_0688 - 27288308-27288366,27288475-27288595,27288888-272889...    30   2.1  
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    29   3.7  
02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080     29   3.7  
10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257     28   6.4  
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933...    28   8.5  

>01_06_0996 +
           33667663-33667900,33668019-33668091,33668785-33668841,
           33668970-33669067,33669482-33669637,33669744-33670366,
           33670484-33670560,33671551-33671805,33671950-33672067,
           33672174-33672345,33672434-33672975
          Length = 802

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 528 SSANQRLAFSYTIAFKSTHPEPAGGAFHMTWTSVLGRSSASTTEFVHS 385
           S   Q++   Y    KSTHP+    + H   T+VLG    S    +H+
Sbjct: 87  SHLKQKIKPFYHFKGKSTHPDDVIASHHDMLTTVLGSKEDSLASIIHN 134


>04_04_0688 -
           27288308-27288366,27288475-27288595,27288888-27288942,
           27289041-27289156,27289548-27289616,27289975-27290084,
           27290222-27290306
          Length = 204

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 669 AWVGKFFGCVCGDQSPSNTILYLASSQAQQSGMDR 565
           AW+G+ F CVC  +  S+  +    S AQ+  + R
Sbjct: 37  AWIGRGFSCVCAQRRDSDQRISFDLSPAQECCLQR 71


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 173 HYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAG 283
           HY+ I+ G +   + D   ++T+ G RT  +V ++AG
Sbjct: 325 HYQHIIEGTINAMSRDDERLLTIEGCRTALLVLRYAG 361


>02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080
          Length = 608

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
 Frame = +2

Query: 137 GPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPD 316
           G G G  +   +H  L +    E+  P QR    L G  ++DV        +++   N  
Sbjct: 471 GGGGGGVTIAASHSSLAIVTVSEQDNPSQR---ELEGKSSNDVGNVQLAVPLLVH--NAP 525

Query: 317 TRRAPSKQGQFQLFADTL-TKFDEECTNSVVEADDLPKTEVQVMWKAPPAGSG 472
            ++    +G+  + A    T  DE C     + DD  K + ++ ++ P AG G
Sbjct: 526 DKKVEGSEGEPNVTAAAEETDSDEMCGEYTDDGDDDDKMQYKIEFQKPTAGGG 578


>10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257
          Length = 421

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 341 PVCWAPSLCPGSKD 300
           PVCWAP   PGS D
Sbjct: 241 PVCWAPPSAPGSYD 254


>12_02_0453 +
           19192060-19192301,19192477-19192559,19193246-19193328,
           19193616-19193668,19194041-19194169,19194585-19194643,
           19195317-19195429,19195571-19195663,19195810-19195912,
           19196233-19196315,19196407-19196448
          Length = 360

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +2

Query: 140 PGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDT 319
           P   +K  G+ H+ +++     R    Q YV+    +  H+  ++  G  II+DP     
Sbjct: 259 PSAFTKVTGEAHWEILLRA---RAIETQCYVIAAAQAGKHNEKRESYGDSIIIDPWGTVI 315

Query: 320 RRAPSK 337
            R P +
Sbjct: 316 ARLPDR 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,184,551
Number of Sequences: 37544
Number of extensions: 476659
Number of successful extensions: 1524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)