Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30f03
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0377 + 17086775-17088310 112 2e-25
08_02_0974 + 23200053-23200167,23200184-23200665 75 3e-14
01_01_1172 - 9324919-9325071,9325425-9325570,9326986-9327039,932... 33 0.14
02_01_0635 + 4765200-4766144,4766392-4767006 29 2.3
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873... 29 3.0
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 29 3.9
12_02_0604 + 20920609-20922144 28 5.2
02_04_0301 + 21807537-21808460,21809786-21810409 28 5.2
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 28 6.9
02_05_0656 + 30671152-30671227,30671330-30671464,30671591-306716... 28 6.9
03_02_0674 - 10329933-10331537 27 9.1
>09_04_0377 + 17086775-17088310
Length = 511
Score = 112 bits (269), Expect = 2e-25
Identities = 47/83 (56%), Positives = 71/83 (85%)
Frame = +2
Query: 98 FVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA 277
+V GKRIPRRGE+GL+++EI +E +GYVMSGSRH+RM A+RIRKENQ+YSA++KRALA
Sbjct: 410 YVQQGKRIPRRGEVGLSAEEIQKFEDLGYVMSGSRHQRMNAIRIRKENQVYSAEDKRALA 469
Query: 278 AFSKDERNKRENAILSQFRDVLK 346
F+ +E++KRE+ +++ + +++
Sbjct: 470 MFNYEEKSKREHKVMADLQRLVQ 492
>08_02_0974 + 23200053-23200167,23200184-23200665
Length = 198
Score = 75.4 bits (177), Expect = 3e-14
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +2
Query: 179 GYVMSGSRHRRMEAVRIRKENQIYSADEKRALAAFSKDERNKRENAILSQFR 334
GYVMSGSRH R+ AVR+RKENQ+YSA+EKRALAAF+ ++R +RE+ + R
Sbjct: 124 GYVMSGSRHARITAVRLRKENQVYSAEEKRALAAFNSEQRARRESKVRDDLR 175
>01_01_1172 -
9324919-9325071,9325425-9325570,9326986-9327039,
9327647-9327866,9327976-9328083
Length = 226
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +2
Query: 260 EKRALAAFSKDERNKRENAILSQFRDVLKARQK 358
E ALA F+ DE NKRENA+L +F V++A+++
Sbjct: 20 ETDALARFAVDEHNKRENALL-EFVRVVEAKEQ 51
>02_01_0635 + 4765200-4766144,4766392-4767006
Length = 519
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Frame = -2
Query: 484 LLQMKRLLQPNNVTAYHLQTGYTLIE--WCLCWGTRYXXXXXXXXXSGFEDISKLAKDSV 311
LL + + N+ Y + G ++ W +C R+ FED + K +
Sbjct: 387 LLLPRECQETCNIMGYDVPKGTNVLVNVWAICRDPRHWENAETFIPERFEDSTVDFKGTD 446
Query: 310 FPFVPFVLAKCGEGALLISRVDLVLFADTYCFHASMSAPT 191
F F+PF + L ++V + L + +H P+
Sbjct: 447 FEFIPFGAGRRMCPGLAFAQVSMELALASLLYHFDWELPS 486
>06_03_0084 -
16386962-16387033,16387124-16387175,16387252-16387313,
16387509-16387543,16387637-16387679,16388610-16388692,
16388829-16388917,16390415-16390681,16391370-16391446,
16391546-16391677,16391802-16391870,16392464-16392529,
16392603-16392773,16392848-16392916,16393005-16393086,
16393175-16393219,16393535-16393659,16394271-16394525,
16396561-16396722
Length = 651
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 104 ADGKRIPRRGEIGLTSDEIASYEAVGYVMS 193
++GK I RRG +TSD IA E + ++S
Sbjct: 543 SEGKVIQRRGRFQVTSDSIAQKEVISRLIS 572
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 207 DAWKQYVSAKRTRSTRLMRSAPSPHLARTKGTNGKTLSLASLEMSSKPDK---NEKLSTN 377
D+ + V A TR + R P P+ A T G + +T S S + +PDK E T
Sbjct: 615 DSSIENVKAITTRGGKSTRDPPYPNPAGTNGMSKETPSTDSDDKEIQPDKTVPQEYCDTR 674
Query: 378 KYLVPQQ 398
PQQ
Sbjct: 675 LLPFPQQ 681
>12_02_0604 + 20920609-20922144
Length = 511
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 236 ENQIYSADEKRALAAFSKDERNKRENAILSQFRDVLKARQKRE 364
E + SA+ + A A +KDE N R A+ + VLK + +E
Sbjct: 122 EGSLRSAESRGASEAAAKDEANARLEAVAEEKGHVLKLLRAKE 164
>02_04_0301 + 21807537-21808460,21809786-21810409
Length = 515
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 484 LLQMKRLLQPNNVTAYHLQTGYTLIE--WCLCWGTRYXXXXXXXXXSGFEDISKLAKDSV 311
LL ++ + + V Y + G ++ W +C +RY FE+ S K +
Sbjct: 380 LLNPRKCRETSQVMGYDIPKGTSVFVNMWAICRDSRYWEDPEEYKPERFENNSVDYKGNN 439
Query: 310 FPFVPF 293
F F+PF
Sbjct: 440 FEFLPF 445
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +3
Query: 198 ADIDAWKQYVSAKRTRSTRLMRSAPSPHLARTKGTNGKTLSLASLEMSSKPDKNEKLSTN 377
+DI++ + S +++ L P P + T+ ++S S+ SS PD N + T+
Sbjct: 1036 SDINSSTNF-SIDAVKTSGLNSWTPVPVTNTVRSTHSNSISSTSVPSSSSPDNNPSMQTS 1094
Query: 378 KYLVP 392
+ P
Sbjct: 1095 QQEKP 1099
>02_05_0656 +
30671152-30671227,30671330-30671464,30671591-30671676,
30672184-30672278,30672431-30672556,30672659-30672809
Length = 222
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 134 EIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQ 244
+IG D + EAV V GS ++ A RI ENQ
Sbjct: 185 KIGKDKDGLLRKEAVREVYDGSLFTKLAAARINDENQ 221
>03_02_0674 - 10329933-10331537
Length = 534
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 209 RMEAVRIRKENQIYSADEKRALAAFSK-DERNKRENAILSQFRDVLKARQKR 361
R E + +R E++ +A +++ + + +E KR + + ++LK RQK+
Sbjct: 453 RREGIELRNEDEKIAAAKRKLREGYQEAEEAKKRRKIHVIEDPEILKQRQKK 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,987,514
Number of Sequences: 37544
Number of extensions: 310723
Number of successful extensions: 871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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