Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f03
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...   113   1e-25
U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily ass...    30   1.2  
Z46935-5|CAL36508.1|  709|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z46935-3|CAE48508.1|  794|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z46935-2|CAA87052.1|  792|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68161-1|CAA92296.2|  230|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U88311-2|AAB42350.2|  529|Caenorhabditis elegans Udp-glucuronosy...    28   6.2  
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    28   6.2  
Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical p...    27   8.2  
AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical...    27   8.2  
AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear recep...    27   8.2  
AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear recep...    27   8.2  
AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear recep...    27   8.2  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score =  113 bits (272), Expect = 1e-25
 Identities = 51/88 (57%), Positives = 69/88 (78%)
 Frame = +2

Query: 98  FVADGKRIPRRGEIGLTSDEIASYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA 277
           + A G+RIPRRGEIGL+S EIA YE VGYVMSGSRH+ MEA R+RKENQ+++A+EKR L 
Sbjct: 416 YAARGERIPRRGEIGLSSGEIAEYEKVGYVMSGSRHKAMEATRLRKENQVFTAEEKRILN 475

Query: 278 AFSKDERNKRENAILSQFRDVLKARQKR 361
           + S + + K+E A+L QFR+++  +  R
Sbjct: 476 SVSVEAKKKKEEAVLDQFRNLIHHKNMR 503


>U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform b protein.
          Length = 733

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 128 RGEIGLTSDEIASYEAVGYV---MSGSRHRRMEAVRIRKENQIYSADEKRALAAFSKDER 298
           +G++  T D   S  + G+     +GSRH R  +   R     Y   +K   A+F+ +E+
Sbjct: 146 QGDLASTDDSGVSSASRGHTPNGSTGSRHVRAASTAGRFVKTDYEGKKKAHPASFANEEK 205

Query: 299 NKREN 313
            KR+N
Sbjct: 206 AKRKN 210


>Z46935-5|CAL36508.1|  709|Caenorhabditis elegans Hypothetical
           protein M106.4c protein.
          Length = 709

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 517 LKG*FQSSLCTLLQMKRLLQPNNVTAYHLQTGY 419
           + G   S++C  L ++R L PN VTA H+  G+
Sbjct: 243 VSGGVDSAVCAAL-LRRALGPNRVTAIHIDNGF 274


>Z46935-3|CAE48508.1|  794|Caenorhabditis elegans Hypothetical
           protein M106.4b protein.
          Length = 794

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 517 LKG*FQSSLCTLLQMKRLLQPNNVTAYHLQTGY 419
           + G   S++C  L ++R L PN VTA H+  G+
Sbjct: 328 VSGGVDSAVCAAL-LRRALGPNRVTAIHIDNGF 359


>Z46935-2|CAA87052.1|  792|Caenorhabditis elegans Hypothetical
           protein M106.4a protein.
          Length = 792

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 517 LKG*FQSSLCTLLQMKRLLQPNNVTAYHLQTGY 419
           + G   S++C  L ++R L PN VTA H+  G+
Sbjct: 326 VSGGVDSAVCAAL-LRRALGPNRVTAIHIDNGF 357


>Z68161-1|CAA92296.2|  230|Caenorhabditis elegans Hypothetical
           protein F20C5.3 protein.
          Length = 230

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 582 IPPGRMWNFQQRNAYNLSQN 523
           +PPG+MW F+ R  Y+ + N
Sbjct: 178 VPPGKMWIFESRTIYDENGN 197


>U88311-2|AAB42350.2|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein26 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +3

Query: 195 GADIDAWKQYVSAKRTRSTRLMRSAPSPHLARTKGTNGKTLSLASLEMSSKPDKNEKLST 374
           G+DI  WK+ +S     S  L  +  +P +   + +  KT+S+  + +  +  K+EKL+ 
Sbjct: 237 GSDIPDWKELMS-----SASLYFTNSNPFIDYPRASIQKTISIGGITVDFQQIKSEKLNK 291

Query: 375 NKYLVPQQRHHSIRV 419
               V  +R  S+ +
Sbjct: 292 EWEEVLNKRQKSMLI 306


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
            protein Y61A9LA.10 protein.
          Length = 986

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 206  RRMEAVRIRKENQIYSADEKRALAAFSKDERNKRENAILSQFRDVLKARQKRE 364
            R +  V ++K+  I    +KR     ++ E  KRE +I S+ +D+ +   K+E
Sbjct: 920  RTLNDVDLKKQENIKEGYKKRKAEEMAESEA-KREKSIKSRKKDISRVLSKKE 971


>Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 349 GFEDISKLAKDSVFP--FVPFVLAKCGEGALLISRVDLVLFA 230
           GF D+ K  K  +F   F+PFV+ + G  A + +R D+++ A
Sbjct: 195 GFADLHKDQKIILFRNFFLPFVILQGGHFACIHNRSDVIILA 236


>AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 349 GFEDISKLAKDSVFP--FVPFVLAKCGEGALLISRVDLVLFA 230
           GF D+ K  K  +F   F+PFV+ + G  A + +R D+++ A
Sbjct: 195 GFADLHKDQKIILFRNFFLPFVILQGGHFACIHNRSDVIILA 236


>AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 349 GFEDISKLAKDSVFP--FVPFVLAKCGEGALLISRVDLVLFA 230
           GF D+ K  K  +F   F+PFV+ + G  A + +R D+++ A
Sbjct: 194 GFADLHKDQKIILFRNFFLPFVILQGGHFACIHNRSDVIILA 235


>AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 349 GFEDISKLAKDSVFP--FVPFVLAKCGEGALLISRVDLVLFA 230
           GF D+ K  K  +F   F+PFV+ + G  A + +R D+++ A
Sbjct: 193 GFADLHKDQKIILFRNFFLPFVILQGGHFACIHNRSDVIILA 234


>AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 349 GFEDISKLAKDSVFP--FVPFVLAKCGEGALLISRVDLVLFA 230
           GF D+ K  K  +F   F+PFV+ + G  A + +R D+++ A
Sbjct: 189 GFADLHKDQKIILFRNFFLPFVILQGGHFACIHNRSDVIILA 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,617
Number of Sequences: 27780
Number of extensions: 271593
Number of successful extensions: 708
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)