Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f01
         (194 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5KKV7 Cluster: Expressed protein; n=2; Filobasidiella ...    32   2.8  
UniRef50_Q0RYW8 Cluster: Putative uncharacterized protein; n=1; ...    31   6.5  

>UniRef50_Q5KKV7 Cluster: Expressed protein; n=2; Filobasidiella
           neoformans|Rep: Expressed protein - Cryptococcus
           neoformans (Filobasidiella neoformans)
          Length = 444

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 32  LEVIGCGSKRITCNPENPPCKK*VCRRWTKPSYRDHSTS 148
           +E  G GS  +TC+P   P    + R +T PSYR HS S
Sbjct: 353 IETGGFGS--VTCDPTPLPTPLGIHRLYTTPSYRSHSLS 389


>UniRef50_Q0RYW8 Cluster: Putative uncharacterized protein; n=1;
           Rhodococcus sp. RHA1|Rep: Putative uncharacterized
           protein - Rhodococcus sp. (strain RHA1)
          Length = 171

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 89  CKK*VCRRWTKPSYRDHSTSGDVTAGLL 172
           C   V   WTKP+ RD +T+G + AG+L
Sbjct: 64  CLACVGHLWTKPTIRDWATTGALAAGML 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,396,526
Number of Sequences: 1657284
Number of extensions: 3197687
Number of successful extensions: 7412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7404
length of database: 575,637,011
effective HSP length: 44
effective length of database: 502,716,515
effective search space used: 10054330300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)