Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30f01
         (194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    23   4.2  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    23   4.2  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    23   5.6  
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    23   5.6  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    23   7.4  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 75  LRIRRARNKFVGDGQSHHTEII 140
           LR+R A +KF   G S + EI+
Sbjct: 156 LRLRNAISKFTNSGSSLNNEIL 177


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 697

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 41 IGCGSKRITCNPENPPCK 94
          I C  K+I C+ E P C+
Sbjct: 25 IRCRQKKIKCSGEKPSCQ 42


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 47 CGSKRITCNPENPPCK 94
          C  K+I CN E P C+
Sbjct: 14 CRRKKIRCNRELPSCQ 29


>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 131

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 53 SKRITCNPENPPC 91
          ++++ C P +PPC
Sbjct: 48 AQKVACGPRDPPC 60


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 68  CNPENPPCKK*VCRRWTKPSYRDH 139
           CNP+ PP    VC   + PS   H
Sbjct: 169 CNPKEPPKTYPVCTIRSTPSQPIH 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 815,791
Number of Sequences: 5004
Number of extensions: 13331
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)